Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 3e-14 seq15 89.7 4e-13 >seq6 Length=87043187 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| |||||||| || || | |||||||| || ||||| ||||| |||||||| Sbjct 51008421 GCCTTTGCAGCTGTTGAGGGGATCTTCTTTTCTGGCTCCTTTGCTGCCATTTTCTGGCTA 51008480 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGA 22868 ||||| | |||||||||||| | | || ||||||||| | || ||| | ||||| Sbjct 51008481 AAGAAGAGGGGGCTCATGCCAGGCCTAACCTTCTCCAACGAGCTCATCAGCAGAGACGA 51008539 >seq15 Length=103963436 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 || |||||||||||||| || || | || |||||||| ||||| ||||| ||||||||| Sbjct 25930789 GCATTTGCGGCTGTTGAGGGGATCTTCTTCTCTGGGTCCTTTGCTGCCATTTTCTGGCTG 25930848 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGA 22868 ||||| | ||||||||| || || | || || || ||| | || ||| | ||||| Sbjct 25930849 AAGAAGAGGGGGCTCATGCCTGGCCTGACCTTCTCAAATGAGCTCATCAGCAGAGACGA 25930907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355225676548465