Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq11 98.7 1e-15 seq4 98.7 1e-15 >seq11 Length=93888508 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | |||| ||||| ||||| || ||| Sbjct 55250613 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCTTCCAGCTGCTTGCCA 55250672 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||||||||||||| || ||||| ||||| || ||||| ||| || || Sbjct 55250673 GCGAAGATCAGACGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 55250732 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||| ||||| | ||| | ||||| ||||| | || Sbjct 55250733 ACGTTCTCGATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTCTTTCCGGTAAGTGTC 55250792 Query 139748 TTTACGAATATTTGCAT 139764 |||||||| || ||||| Sbjct 55250793 TTTACGAAGATCTGCAT 55250809 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | |||| ||||| ||||| || ||| Sbjct 55250385 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCATCTTCCAGCTGCTTGCCA 55250444 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||||||| ||||| || || || ||||| || ||||| ||| || || Sbjct 55250445 GCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 55250504 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | ||||||||||| | || Sbjct 55250505 ACATTCTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTAAGGGTC 55250564 Query 139748 TTTACGAATATTTGCATAGCT 139768 || || || || |||||| || Sbjct 55250565 TTCACAAAGATCTGCATACCT 55250585 >seq4 Length=82398023 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || ||| | |||| |||||| ||||| || || Sbjct 51880805 GTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTGCTTCCCG 51880746 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||||||| ||||| || || || ||||| || ||||| ||| || || Sbjct 51880745 GCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 51880686 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||||| ||| | |||||||| || | || Sbjct 51880685 ACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCTGTGAGGGTC 51880626 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 51880625 TTCACGAAGATCTGCAT 51880609 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || ||| | |||| |||||| ||||| || || Sbjct 51881033 GTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTGCTTCCCG 51880974 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||||||| ||||| || || || ||||| || ||||| ||| || || Sbjct 51880973 GCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 51880914 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||||| ||| | || || ||||| | || Sbjct 51880913 ACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATGGTTTTACCGGTGAGGGTC 51880854 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 51880853 TTGACGAAGATCTGCAT 51880837 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || ||| | |||| |||||| ||||| || || Sbjct 51881261 GTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTGCTTCCCG 51881202 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||||||| ||||| || || || ||||| || ||||| ||| || || Sbjct 51881201 GCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 51881142 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||||| ||| | || || ||||| | || Sbjct 51881141 ACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATGGTTTTACCGGTGAGGGTC 51881082 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 51881081 TTGACGAAGATCTGCAT 51881065 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || ||| | |||| |||||| ||||| || || Sbjct 51881489 GTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTGCTTCCCG 51881430 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||||||| ||||| || || || ||||| || ||||| ||| || || Sbjct 51881429 GCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 51881370 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||||| ||| | || || ||||| | || Sbjct 51881369 ACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATGGTTTTACCGGTGAGGGTC 51881310 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 51881309 TTGACGAAGATCTGCAT 51881293 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || ||| | |||| |||||| ||||| || || Sbjct 51881717 GTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTGCTTCCCG 51881658 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||||||| ||||| || || || ||||| || ||||| ||| || || Sbjct 51881657 GCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 51881598 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||||| ||| | || || ||||| | || Sbjct 51881597 ACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATGGTTTTACCGGTGAGGGTC 51881538 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 51881537 TTGACGAAGATCTGCAT 51881521 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || ||| | |||| |||||| ||||| || || Sbjct 51881945 GTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTGCTTCCCG 51881886 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||||||| ||||| || || || ||||| || ||||| ||| || || Sbjct 51881885 GCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 51881826 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||||| ||| | || || ||||| | || Sbjct 51881825 ACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATGGTTTTACCGGTGAGGGTC 51881766 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 51881765 TTGACGAAGATCTGCAT 51881749 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || ||| | |||| |||||| ||||| || || Sbjct 51882173 GTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTGCTTCCCG 51882114 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||||||| ||||| || || || ||||| || ||||| ||| || || Sbjct 51882113 GCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 51882054 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||||| ||| | || || ||||| | || Sbjct 51882053 ACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATGGTTTTACCGGTGAGGGTC 51881994 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 51881993 TTGACGAAGATCTGCAT 51881977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494624453276000