Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq23 87.8 1e-12 seq4 84.2 2e-11 seq14 82.4 6e-11 seq13 82.4 6e-11 seq1 82.4 6e-11 >seq23 Length=49854004 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTTCTAAT 15217 |||||||||||| ||||| || ||||| || || | | || || | || || | | Sbjct 40744169 ATGAAGGGTGGACTCTTTCTGGATGTTATAGTC--TGACAAGGTGCGACCATCCTCAAGT 40744112 Query 15218 TGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATT 15277 |||||||||||| | |||| ||| || || || ||||| ||||| || || || Sbjct 40744111 TGTTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATC 40744052 Query 15278 TTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCT 15337 ||| ||| ||| |||| || |||||||| || || || | ||| || ||||| || Sbjct 40744051 TTGGCCTTGACATTTTCAATAGTATCGCTGGGCTCAACCTCAAGGGTGATTGTTTTCCCC 40743992 Query 15338 GTCAGAGTTTTTACAAAAATTTGCATATT 15366 |||| || || || || || ||||| || Sbjct 40743991 GTCAACGTCTTCACGAATATCTGCATCTT 40743963 >seq4 Length=82398023 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| ||||| || |||||||| ||| || | | ||||||| | || Sbjct 51881040 ATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTG 51880981 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || || ||| | |||| ||| || ||||| || || || || ||||| || || Sbjct 51880980 CTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTT 51880921 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| | || ||||| || || || || || | ||| ||||||||||| || Sbjct 51880920 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATGGTTTTACCGGT 51880861 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||| Sbjct 51880860 GAGGGTCTTGACGAAGATCTGCAT 51880837 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| ||||| || |||||||| ||| || | | ||||||| | || Sbjct 51881268 ATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTG 51881209 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || || ||| | |||| ||| || ||||| || || || || ||||| || || Sbjct 51881208 CTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTT 51881149 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| | || ||||| || || || || || | ||| ||||||||||| || Sbjct 51881148 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATGGTTTTACCGGT 51881089 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||| Sbjct 51881088 GAGGGTCTTGACGAAGATCTGCAT 51881065 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| ||||| || |||||||| ||| || | | ||||||| | || Sbjct 51881496 ATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTG 51881437 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || || ||| | |||| ||| || ||||| || || || || ||||| || || Sbjct 51881436 CTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTT 51881377 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| | || ||||| || || || || || | ||| ||||||||||| || Sbjct 51881376 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATGGTTTTACCGGT 51881317 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||| Sbjct 51881316 GAGGGTCTTGACGAAGATCTGCAT 51881293 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| ||||| || |||||||| ||| || | | ||||||| | || Sbjct 51881724 ATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTG 51881665 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || || ||| | |||| ||| || ||||| || || || || ||||| || || Sbjct 51881664 CTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTT 51881605 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| | || ||||| || || || || || | ||| ||||||||||| || Sbjct 51881604 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATGGTTTTACCGGT 51881545 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||| Sbjct 51881544 GAGGGTCTTGACGAAGATCTGCAT 51881521 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| ||||| || |||||||| ||| || | | ||||||| | || Sbjct 51881952 ATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTG 51881893 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || || ||| | |||| ||| || ||||| || || || || ||||| || || Sbjct 51881892 CTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTT 51881833 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| | || ||||| || || || || || | ||| ||||||||||| || Sbjct 51881832 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATGGTTTTACCGGT 51881773 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||| Sbjct 51881772 GAGGGTCTTGACGAAGATCTGCAT 51881749 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| ||||| || |||||||| ||| || | | ||||||| | || Sbjct 51882180 ATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTG 51882121 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || || ||| | |||| ||| || ||||| || || || || ||||| || || Sbjct 51882120 CTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTT 51882061 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| | || ||||| || || || || || | ||| ||||||||||| || Sbjct 51882060 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATGGTTTTACCGGT 51882001 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||| Sbjct 51882000 GAGGGTCTTGACGAAGATCTGCAT 51881977 >seq14 Length=93901823 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 15260 CCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCT 15319 ||||||||||| ||| ||| ||| ||| | || || ||||| || ||| || || Sbjct 13268623 CCTTCTTTGTCTTGAATCTTGGCCTTCACATTCTCGATAGTATCACTGGGTTCCACCTCA 13268682 Query 15320 AAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 | ||| ||||||||||| |||| ||||| ||||| || ||||||||||| Sbjct 13268683 AGGGTGATGGTTTTACCCGTCAAGGTTTTCACAAAGATCTGCATATTTGA 13268732 >seq13 Length=107758822 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| ||||| || ||||||||||| || | | | ||||| | || Sbjct 72692416 ATGGAGGGTGGATTCTTTCTGGATGTTGTAATCTGAGAGGGTGCGGCCATCTTCCAGCTG 72692475 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||| ||| | |||| | || ||||| || || || || ||||| || || Sbjct 72692476 CTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTT 72692535 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| | || ||||| ||||| || || || | ||| ||||| || ||||| Sbjct 72692536 GGCCTTCACATTCTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGGTCTTGCCTGT 72692595 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 ||| || || || || || |||||| Sbjct 72692596 CAGGGTCTTGACGAAGATCTGCATA 72692620 >seq1 Length=159038749 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||||||||| || || || |||||||| ||| || | | | ||||| | || Sbjct 137747055 ATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTG 137746996 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | |||| ||| || ||||| || || || || ||||| || || Sbjct 137746995 CTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTT 137746936 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || | || ||||| || || || || || | ||| ||||| ||||| || Sbjct 137746935 GGCCTTGACGTTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTACCAGT 137746876 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 ||| ||||| || || || |||||| Sbjct 137746875 CAGGGTTTTAACGAAGATCTGCATA 137746851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361154454132855