Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq23 156 1e-32 seq13 132 1e-25 seq11 131 4e-25 seq1 131 4e-25 seq204568 107 4e-18 seq93808 107 4e-18 seq5 107 4e-18 seq14 100 7e-16 seq15 93.3 1e-13 seq6 86.0 1e-11 >seq23 Length=49854004 Score = 156 bits (172), Expect = 1e-32 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || |||||||| || |||||||| || | || | ||| || Sbjct 40744177 AGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCTGACAAGGTGCGACCATCC 40744118 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || |||||||| ||||| || || || | ||| ||||||||||| || ||||| |||||| Sbjct 40744117 TCAAGTTGTTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCC 40744058 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || |||||||| | |||||||| || || ||||| || || || || Sbjct 40744057 TGGATCTTGGCCTTGACATTTTCAATAGTATCGCTGGGCTCAACCTCAAGGGTGATTGTT 40743998 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || | || || || ||||||||||| ||| Sbjct 40743997 TTCCCCGTCAACGTCTTCACGAATATCTGCATCTTG 40743962 >seq13 Length=107758822 Score = 132 bits (146), Expect = 1e-25 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| || || || | || || ||||| | || ||||||||||| || || ||||| || Sbjct 72692164 TCCTCCCCTGAGTCGCAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCTGA 72692223 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || || | || ||||| || || || || || || || |||||||| || || || || Sbjct 72692224 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGCGG 72692283 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 || || || || ||||| ||||| || || ||||| || | ||| ||||| || || || Sbjct 72692284 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTTGGCTCAAC 72692343 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || ||||| || || || || || || || |||||||| Sbjct 72692344 CTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 72692391 Score = 132 bits (146), Expect = 1e-25 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || ||||||||||| || || ||||| Sbjct 72692846 ATACCTCCCCTGAGACGCAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCT 72692905 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || || || || || |||||||| || || || Sbjct 72692906 GAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGC 72692965 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| ||||| || || ||||| || | ||| ||||| || || Sbjct 72692966 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTTGGCTCA 72693025 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||| || || || || || || || |||||||| || Sbjct 72693026 ACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATCTT 72693078 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || ||||||||||| || || ||||| Sbjct 72692618 ATACCTCCCCTGAGACGCAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCT 72692677 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || || || || || |||||||| || || || Sbjct 72692678 GAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGC 72692737 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| ||||| || || ||||| || | ||| ||||| || || Sbjct 72692738 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTTGGCTCA 72692797 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || || || || || || |||||||| Sbjct 72692798 ACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 72692847 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || ||||||||||| || || || || Sbjct 72692390 ATACCTCCCCTGAGACGCAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAATCT 72692449 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || || || || || |||||||| || || || Sbjct 72692450 GAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGC 72692509 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| ||||| || || ||||| || | ||| ||||| || || Sbjct 72692510 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTTGGCTCA 72692569 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || || || || || || |||||||| Sbjct 72692570 ACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 72692619 >seq11 Length=93888508 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| || || ||||| || ||||| | ||| ||| Sbjct 55249914 AGGACCAGATGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCT 55249973 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || || | ||| || || || || || || || || ||| Sbjct 55249974 TCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 55250033 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || ||||| || | ||| || || || || ||||| || || || ||| Sbjct 55250034 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTCGGCTCAACCTCCAGGGTGATGGTC 55250093 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || || || || || |||||||| Sbjct 55250094 TTACCAGTCAGGGTCTTCACGAAGATCTGCAT 55250125 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || || || || || || || ||||| Sbjct 55250124 ATACCTCCCCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCG 55250183 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| ||||| || || || ||||| || || || | ||| || || || Sbjct 55250184 GAGAGCGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGG 55250243 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| ||||| || || ||||| || | ||| ||||| || || Sbjct 55250244 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTCGGCTCA 55250303 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||||||||| || || || || || |||||||| Sbjct 55250304 ACCTCCAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 55250353 >seq1 Length=159038749 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| || || ||||| || || || | || ||| Sbjct 137747063 AGGACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 137747004 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || ||||||||||| || || | ||| || || || || || || || || ||| Sbjct 137747003 TCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 137746944 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || || || || | ||| || || || || ||||| || || || ||| Sbjct 137746943 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 137746884 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || ||||| || || |||||||| Sbjct 137746883 TTACCAGTCAGGGTTTTAACGAAGATCTGCAT 137746852 Score = 129 bits (142), Expect = 1e-24 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || || || ||||| || || ||||| Sbjct 137746625 ATACCTCCCCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 137746566 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || || ||||| || || | ||| || || || Sbjct 137746565 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGG 137746506 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| ||||| || || ||||| || | ||| || || || || Sbjct 137746505 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCA 137746446 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||||||||| || || || ||||| |||||||| ||| Sbjct 137746445 ACCTCAAGGGTGATGGTCTTACCAGTTAGGGTCTTCACAAAGATCTGCATCTTG 137746392 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || || || ||||| || || ||||| Sbjct 137746853 ATACCTCCCCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 137746794 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || || ||||| || || | ||| || || || Sbjct 137746793 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGG 137746734 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| ||||| || || ||||| || | ||| || || || || Sbjct 137746733 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCA 137746674 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||||||||| || ||||| || || |||||||| Sbjct 137746673 ACCTCAAGGGTGATGGTCTTACCAGTCAGGGTTTTAACGAAGATCTGCAT 137746624 >seq204568 Length=5217 Score = 107 bits (118), Expect = 4e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 78487 AGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCAT 78546 ||| || |||||||||| |||||||||||| |||| ||||| || || |||||||||| Sbjct 4109 AGCGTTGTGGTGGTATTTCATCTCTAAAGGAGTAGAGTACCTGGACACGGTCTTCTTCAT 4050 Query 78547 CCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTT 78606 ||| | ||||| ||||| || | || || ||||| || || || || | ||| ||||| Sbjct 4049 CCTGAGGAAGAAGTTTAACCAGGTCAGCTTCCTACACGTCTACCACCACTGTACCATGTT 3990 Query 78607 TACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 || | | ||||| || || || ||| | || || ||||| Sbjct 3989 CACCCTCTGGTGGATCGGCATCAAGTGGGTGGCTGGCGGACA 3948 >seq93808 Length=4840 Score = 107 bits (118), Expect = 4e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 78487 AGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCAT 78546 ||| || |||||||||| |||||||||||| |||| ||||| || || |||||||||| Sbjct 1242 AGCGTTGTGGTGGTATTTCATCTCTAAAGGAGTAGAGTACCTGGACACGGTCTTCTTCAT 1301 Query 78547 CCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTT 78606 ||| | ||||| ||||| || | || || ||||| || || || || | ||| ||||| Sbjct 1302 CCTGAGGAAGAAGTTTAACCAGGTCAGCTTCCTACACGTCTACCACCACTGTACCATGTT 1361 Query 78607 TACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 || | | ||||| || || || ||| | || || ||||| Sbjct 1362 CACCCTCTGGTGGATCGGCATCAAGTGGGTGGCTGGCGGACA 1403 >seq5 Length=80503876 Score = 107 bits (118), Expect = 4e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 78487 AGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCAT 78546 ||| || |||||||||| |||||||||||| |||| ||||| || || |||||||||| Sbjct 79606332 AGCGTTGTGGTGGTATTTCATCTCTAAAGGAGTAGAGTACCTGGACACGGTCTTCTTCAT 79606391 Query 78547 CCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTT 78606 ||| | ||||| ||||| || | || || ||||| || || || || | ||| ||||| Sbjct 79606392 CCTGAGGAAGAAGTTTAACCAGGTCAGCTTCCTACACGTCTACCACCACTGTACCATGTT 79606451 Query 78607 TACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 || | | ||||| || || || ||| | || || ||||| Sbjct 79606452 CACCCTCTGGTGGATCGGCATCAAGTGGGTGGCTGGCGGACA 79606493 >seq14 Length=93901823 Score = 100 bits (110), Expect = 7e-16 Identities = 102/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 269133 GGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCT 269192 || |||| || || || || || || || || ||||| |||||||| ||||| ||||| | Sbjct 93501880 GGATAGTGGCGTTCGCTGCAGTGGAGGGCATCTTCTTCTCGGGGTCGTTTGCAGCTATTT 93501939 Query 269193 TTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCA 269252 |||||||||||| |||||||| ||||| || | || | ||| ||||| | || |||| Sbjct 93501940 ATTGGTTGAAGAAGAGAGGCCTGATGCCTGGGCTCACCTACTCCAACGAGCTCATCAGCA 93501999 Query 269253 GGGACGAAGGTT 269264 | |||| ||||| Sbjct 93502000 GAGACG-AGGTT 93502010 >seq15 Length=103963436 Score = 93.3 bits (102), Expect = 1e-13 Identities = 116/157 (74%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| || |||||||| ||| | || || || ||||| | ||||||||||| | Sbjct 38278967 TGGTGGTACTACATCTCTAAGGGAGTGGAGTATCTGGATACGGTGTTCTTCATCCTGAGG 38279026 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTT--TACTT 78611 | ||| ||||| || | || || || ||||| || ||||| | || ||||| | || Sbjct 38279027 AGGAAGTTTAACCAGGTCAGCTTCCTCCATGTCTACCATCACTGCACCATGTTCATCCTC 38279086 Query 78612 TGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 ||| ||||| || || || ||| || |||||||||| Sbjct 38279087 TGG--TGGATCGGAATCAAGTGGGTCCCAGGAGGACA 38279121 >seq6 Length=87043187 Score = 86.0 bits (94), Expect = 1e-11 Identities = 115/158 (73%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| || |||||||| ||| | || || || || || | ||||||||||| | Sbjct 63071308 TGGTGGTACTACATCTCTAAGGGAGTGGAGTATCTGGACACAGTGTTCTTCATCCTGAGG 63071367 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTA--CTT 78611 ||||| | || || | || || || ||||| || ||||| | || ||||||| || Sbjct 63071368 AAGAAGATCAACCAGGTCAGCTTCCTCCATGTCTACCATCACTGCACCATGTTTATCCTC 63071427 Query 78612 TGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAA 78649 ||| ||||| || || || ||| || | ||||||||| Sbjct 63071428 TGG--TGGATCGGAATCAAGTGGGTCCCTGGAGGACAA 63071463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147973581650740