Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq29 114 9e-21 seq19 98.7 7e-16 >seq29 Length=42488238 Score = 114 bits (126), Expect = 9e-21 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 |||||| |||| ||||| || | | |||||||||||| || ||||| ||||| | ||| Sbjct 12016047 CATGTCGCTGTATTCTGCACCATAGTGCCTCCACTGGAAACCATACACGGGTCCCAAGTC 12015988 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 ||| || |||| || ||| ||| | || |||| || | ||| || ||||| ||||| Sbjct 12015987 TCCCTCCTCCCGGTCTGTAAACCCCATTTTGTCCAGGAACTGTCTCGATCCATTTGCGTC 12015928 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||||||| | ||||| ||||| | |||||| || | ||||| || || Sbjct 12015927 CCAGATCCTCACCCCTTTCTCTGTGAGCTCCTTAGCATTTGTTGAGCC 12015880 Score = 102 bits (112), Expect = 6e-17 Identities = 108/141 (77%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| |||||||| ||||||||||||||| ||||| || || || |||||| Sbjct 12016560 GCGATCATGTAGGTGAGGAGGGCGTAGCTGGCGATGTTGAAGGGCACTCCCAAGCCCATG 12016501 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 || |||||| | |||||| ||||| ||||| | ||| | || | || || ||||| || Sbjct 12016500 TC-CCCCGAGCGCTGGTACAGCTGGCACGACAACTCCCCATCAATGACATAGAACTGGCA 12016442 Query 25626 CATGGTGTAGCACGGAGGAAG 25646 || || | ||| || || || Sbjct 12016441 CAGGGCATGGCAGGGGGGCAG 12016421 >seq19 Length=82978132 Score = 98.7 bits (108), Expect = 7e-16 Identities = 120/161 (75%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 25781 TGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTT 25840 |||| || || || | | |||||||||||| | ||||| ||||| |||||||| || | Sbjct 29462515 TGTATTCCGCACCATAGTGCCTCCACTGGAAACTATACACTGGTCCCAGGTCTCCCTCAT 29462456 Query 25841 CCCTGTGCTC-AAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATC 25899 ||| || ||| || ||| |||| ||||| |||| | ||| || | || ||||| || Sbjct 29462455 CCCGGT-CTCTGAACCCCATCTTGTCCAAGAAGTGTTGGGACCCGTATGCATCCCAAATA 29462397 Query 25900 TTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 || ||||| ||||| ||| |||| |||| ||||| || || Sbjct 29462396 TTCACCCCTTTCTCTGAGTGCTCCTTGGCATTTGTTGAGCC 29462356 Score = 96.9 bits (106), Expect = 2e-15 Identities = 114/152 (75%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||||| ||||||||||||||| ||||| || || |||||| Sbjct 29462949 GCGATCATGTAGGTGAGGATGGCGTAGCTGGCGATGTTGAAGGGCACTCCCTGGCCCATG 29462890 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 || |||||| | ||| || ||||| |||| |||| |||| | ||||| |||||||| Sbjct 29462889 TC-CCCCGAGCACTGATACAGCTGGCACGGCAGCTTCCCGTCAATTACGTACAACTGACA 29462831 Query 25626 CATGGTGTAGCA-CGGAGGAAGAGCTATAAGG 25656 || || | ||| || ||||| || ||| || Sbjct 29462830 CAGGGCATGGCAGGGGGGGAAGCGCCATATGG 29462799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339175218394815