Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq4 86.0 5e-12 >seq4 Length=82398023 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | ||| || ||| ||| || || |||||||| || | | || |||| || Sbjct 51881046 CACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTC 51880987 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| ||| || | || | ||||||||| || || | | ||||||||| Sbjct 51880986 CAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 51880927 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | | | ||||| || | | |||| ||| | ||||||||||| Sbjct 51880926 GATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATGGTTTT 51880867 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||| || || || || |||||||| Sbjct 51880866 ACCGGTGAGGGTCTTGACGAAGATCTGCAT 51880837 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | ||| || ||| ||| || || |||||||| || | | || |||| || Sbjct 51881274 CACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTC 51881215 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| ||| || | || | ||||||||| || || | | ||||||||| Sbjct 51881214 CAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 51881155 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | | | ||||| || | | |||| ||| | ||||||||||| Sbjct 51881154 GATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATGGTTTT 51881095 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||| || || || || |||||||| Sbjct 51881094 ACCGGTGAGGGTCTTGACGAAGATCTGCAT 51881065 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | ||| || ||| ||| || || |||||||| || | | || |||| || Sbjct 51881502 CACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTC 51881443 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| ||| || | || | ||||||||| || || | | ||||||||| Sbjct 51881442 CAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 51881383 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | | | ||||| || | | |||| ||| | ||||||||||| Sbjct 51881382 GATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATGGTTTT 51881323 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||| || || || || |||||||| Sbjct 51881322 ACCGGTGAGGGTCTTGACGAAGATCTGCAT 51881293 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | ||| || ||| ||| || || |||||||| || | | || |||| || Sbjct 51881730 CACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTC 51881671 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| ||| || | || | ||||||||| || || | | ||||||||| Sbjct 51881670 CAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 51881611 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | | | ||||| || | | |||| ||| | ||||||||||| Sbjct 51881610 GATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATGGTTTT 51881551 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||| || || || || |||||||| Sbjct 51881550 ACCGGTGAGGGTCTTGACGAAGATCTGCAT 51881521 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | ||| || ||| ||| || || |||||||| || | | || |||| || Sbjct 51881958 CACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTC 51881899 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| ||| || | || | ||||||||| || || | | ||||||||| Sbjct 51881898 CAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 51881839 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | | | ||||| || | | |||| ||| | ||||||||||| Sbjct 51881838 GATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATGGTTTT 51881779 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||| || || || || |||||||| Sbjct 51881778 ACCGGTGAGGGTCTTGACGAAGATCTGCAT 51881749 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | ||| || ||| ||| || || |||||||| || | | || |||| || Sbjct 51882186 CACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTC 51882127 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| ||| || | || | ||||||||| || || | | ||||||||| Sbjct 51882126 CAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 51882067 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | | | ||||| || | | |||| ||| | ||||||||||| Sbjct 51882066 GATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATGGTTTT 51882007 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||| || || || || |||||||| Sbjct 51882006 ACCGGTGAGGGTCTTGACGAAGATCTGCAT 51881977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420059316462155