Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq10 140 5e-28 seq3 140 5e-28 seq24 134 2e-26 seq14 131 2e-25 seq20 129 8e-25 seq23 118 1e-21 >seq10 Length=116138521 Score = 140 bits (154), Expect = 5e-28 Identities = 197/277 (71%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 8699 CCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCC 8758 || ||||||||||| || || || ||| | | || | |||| ||| |||| || Sbjct 47009875 CCCTTGACGTTGCTGCACACCAGCCTCTGTAAGGACGCGGTGTTGATGATGTCAAAGCCG 47009934 Query 8759 ACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATG 8818 | | ||||| ||||||||||| |||||||| | || ||||| ||| ||| |||| Sbjct 47009935 ATGCTCCCGCCAAAGGTGCTGGGCTTCCAGTACTCTGGTGAGCAAATGGGGTTTCCCATC 47009994 Query 8819 AGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTG 8878 |||||||| || ||| | || || |||| ||| | ||| |||| || |||||||| ||| Sbjct 47009995 AGGCCTTTCAGAGAATAGGGGGCACCCATCTCCACCATGGTCTCCCCAAAGATGGCATTG 47010054 Query 8879 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAA 8938 | | |||||| ||||||| | || | ||| | ||||||||| || | | || || Sbjct 47010055 GTTCTGGGCTTCTCCACCAGCAGACCTGGGTAGAGCTCCACAGCATCCACATGCCCATAC 47010114 Query 8939 AGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 | || || || ||||| || ||||||||||||| Sbjct 47010115 ATCTCCTCCAGCTCTGCAGCCATCTCCTTTTCTCCTG 47010151 Score = 127 bits (140), Expect = 3e-24 Identities = 132/171 (77%), Gaps = 4/171 (2%) Strand=Plus/Plus Query 9676 TTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGA 9735 ||||| ||||| || || | |||||||||||| ||||||||||||||||||||||||||| Sbjct 47012375 TTCAGGACATCACAGACGCGGTTGTGTTCCCTCAGCCAGATAGTAGCGTACATCATGAGA 47012434 Query 9736 CCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCG 9795 |||||||||||||| || ||||| || || ||||| | || | || || || | | Sbjct 47012435 CCAGGCACCAGGCCGAACGCCTCATGGCCCACAGCGAAGCGGTGAGACTCAGGGACATGG 47012494 Query 9796 GGAGGATAGATCATGT--GCACCTGGACATCTTTGACCGAGGGGGGATACA 9844 ||||| ||| ||| | || ||| || ||||| |||| || || |||| Sbjct 47012495 GGAGGGTAGTGCATATCAGCCCCT--ACCTCTTTCACCGTAGGTGGGTACA 47012543 >seq3 Length=92503428 Score = 140 bits (154), Expect = 5e-28 Identities = 233/337 (69%), Gaps = 0/337 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | |||||| || |||||||| || | ||||||| |||||| ||||| Sbjct 14959728 TCACCAATTAGGATGAGGCGTGTGGTCTGGAAAATGCGTTCGTCGTCCCATTCGGGATGC 14959669 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || | ||| || || || || | ||||||||| || |||||||| || ||||||||| Sbjct 14959668 TCCTGCATCATGACGTCACAGACGCGGTTGTGTTCTCTCAGCCAGATGGTGGCGTACATC 14959609 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 |||||||| || |||||||| ||| ||| || || ||||| | || || ||| || Sbjct 14959608 ATGAGACCGGGGACCAGGCCGAAAAGCTCGTGGCCCACAGCGAAGCGGTGATCCTCGAGC 14959549 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 || | ||| |||||| ||| | || || || || ||| | ||||| || | || Sbjct 14959548 ACGTGGGGTGGATAGTGCATCTCGACTCCAACCTCCTTTACCAATGGGGGGTAGACCTCG 14959489 Query 9850 CCGTCAATAATCTGATACTTATCTTTCGCGTCTCTGAAGAGACGCAACTTTGACTGTTTT 9909 || | | || ||||||||| ||| | | |||| | | || ||| |||| | Sbjct 14959488 CCATTCACAACCTGATACTTCAGTTTGCCATTCTTGAACTGCCTCAGCTTGTGCTGTCTC 14959429 Query 9910 TCTGGCGTCTCTCCATAGATGTGGTTGAGATCCACCT 9946 || | || |||||||||| |||| | ||||||| Sbjct 14959428 TCCAGAGTGTCTCCATAGACATGGTGTAAGTCCACCT 14959392 >seq24 Length=48650976 Score = 134 bits (148), Expect = 2e-26 Identities = 152/202 (75%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 8741 TTGACGATCCCAAACCCCACGTCT--CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 ||||| || |||| || |||| || ||||| |||||||| |||||||| | |||| Sbjct 26486885 TTGACTATATCAAAGCCT--GTCTGGCCTCCGAACGTGCTGGGCTTCCAGTACTCAGGGG 26486942 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | ||||| ||| ||| |||||||| ||||| ||||||||||||| ||| | |||| Sbjct 26486943 AACAGATCGGGTTACCCAGAAGGCCTTTCAGGGAGAACGGAGCCCCCATCTCCACCATGC 26487002 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || || ||||||||||| || | ||| |||| || || | | ||| ||||||| Sbjct 26487003 TCTCGCCAAATATGGCGTTGGGGCGTGTCTTCTCCAGCATGAGGGCAGGGTAGAACTCCA 26487062 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 || |||||||| || || || Sbjct 26487063 GCGCATCGATGTCACCATAGAG 26487084 >seq14 Length=93901823 Score = 131 bits (144), Expect = 2e-25 Identities = 231/337 (69%), Gaps = 0/337 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | |||||| || |||||||| || | ||||||| |||||| ||||| Sbjct 14382802 TCACCAATTAGGATGAGGCGTGTGGTCTGGAAGATGCGTTCGTCGTCCCATTCGGGATGC 14382743 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || | |||| || || || || | |||||| || | |||||||| || ||||||||| Sbjct 14382742 TCCTGCCTCAGGACGTCACAGACACGGTTGTGCTCGCGCAGCCAGATGGTGGCGTACATC 14382683 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||||| || || |||||||||||| ||| || || ||||| | || | |||| | Sbjct 14382682 ATGAGGCCGGGGACCAGGCCAAAATGCTCGTGGCCCACAGCGAAGCGGTGCTCCTCGGCC 14382623 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 |||| ||| || ||| ||| | || || || | ||| | ||||| || | || Sbjct 14382622 ACTTGGGGTGGGTAGTGCATCTCGACTCCAACCTCCCTTACCAATGGGGGGTAGACCTCG 14382563 Query 9850 CCGTCAATAATCTGATACTTATCTTTCGCGTCTCTGAAGAGACGCAACTTTGACTGTTTT 9909 || | | || ||||||||| ||| | || |||| || | || ||| |||| | Sbjct 14382562 CCATTCAAAACCTGATACTTCAGTTTGCCATCCTTGAACAGCCTCAGCTTGTGCTGTCTC 14382503 Query 9910 TCTGGCGTCTCTCCATAGATGTGGTTGAGATCCACCT 9946 || | | |||||||| | ||||| | ||||||| Sbjct 14382502 TCCAGACTGTCTCCATAAACATGGTTTAAGTCCACCT 14382466 >seq20 Length=86795997 Score = 129 bits (142), Expect = 8e-25 Identities = 151/202 (75%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCT--CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 ||||| || |||| || |||| || || || |||||||| |||||||| | |||| Sbjct 17085586 TTGACTATATCAAAGCCT--GTCTGGCCTCCAAATGTGCTGGGCTTCCAGTACTCAGGGG 17085529 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | |||||| ||| ||| |||||||| ||||| || |||||||||| ||| | |||| Sbjct 17085528 AACAGATGGGGTTACCCAGAAGGCCTTTCAGGGAGAATGGAGCCCCCATCTCCACCATGC 17085469 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 ||||||| || ||||||||||| || | ||| |||| || || | | ||| ||||||| Sbjct 17085468 TCTCACCAAATATGGCGTTGGGGCGTGTCTTCTCCAGCATGATGGCAGGGTAGAACTCCA 17085409 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 || || ||||| || || || Sbjct 17085408 GCGCATCAATGTCACCATAGAG 17085387 >seq23 Length=49854004 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||| |||| ||||| || || || ||| ||| || || ||| | ||||| Sbjct 4746993 ATGAGGCGAGATGTCTGGAAGAGCCTATCATCATCCCAGTCCGGGTGTACCTCCTTCAGG 4746934 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 ||||| || |||| ||||||||| || |||||||| ||||| |||||||| ||||||||| Sbjct 4746933 ACATCACAGACTCGGTTGTGTTCTCTCAGCCAGATGGTAGCATACATCATAAGACCAGGC 4746874 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||||||| || ||||| || || ||||| | || | || || || | |||||| Sbjct 4746873 ACCAGGCCGAATGCCTCATGGCCCACAGCGAAGCGGTGAGACTCAGGGACATGGGGAGGG 4746814 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACA 9844 ||| ||| | |||| || || || || | || || |||| Sbjct 4746813 TAGTGCATATCCACCCCTACCTCCTTCACTGTAGGTGGGTACA 4746771 Score = 102 bits (112), Expect = 1e-16 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 || || ||||||||||| |||||||| | || || || ||| || |||| |||||| Sbjct 4750752 CCACCAAAGGTGCTGGGCTTCCAGTACTCTGGCGAACAAATGGGATTTCCCATCAGGCCT 4750693 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 || ||||| | || || |||| ||| | ||| |||| || |||||||| |||| | Sbjct 4750692 TTCAGGGAGTAGGGGGCGCCCATCTCCACCATGGTCTCCCCAAAGATGGCATTGGTTCTT 4750633 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCC 8944 ||||| ||||||| | || | ||| | ||||||||| || | | ||| || | || Sbjct 4750632 GGCTTCTCCACCAGCAGGCCTGGGTAGAGCTCCACAGCATCCACATGTCCATACATCTCC 4750573 Query 8945 CTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || ||||| || ||| | || |||| Sbjct 4750572 TCCAGCTCAGCAGCCATCTCCGTATCCCCTG 4750542 Score = 87.8 bits (96), Expect = 3e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 10026 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTA 10085 || || ||||| || ||| |||||||||||||||| || | | |||| | Sbjct 4744572 GTACTCACCCCGTGGCCCTTGGCTTTAGTGAAGGCCGGCCCCATCTTCTGGTCAGATTTG 4744513 Query 10086 AAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGA 10145 || |||||||| ||||| |||||| |||| ||||||||||| | ||| |||||| || Sbjct 4744512 AAGAACTGGTGGGTGAAGTGTTGGGCAAAGAAGGCAAACATCAGACTGGAGCCCTGAGGG 4744453 Query 10146 TCGGGAGTGAAGGTCCTCC-GAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAG 10204 || || | || |||||| || | ||| || || || | | | | ||||| ||||| Sbjct 4744452 TCTGGGATAAACTTCCTCCTGATCAGGAGCTTCTTTGCCAGCATCT-CAGCATCAGGCAG 4744394 Query 10205 AttttttttACCTGG 10219 || || |||||||| Sbjct 4744393 CTTCTTCTTACCTGG 4744379 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||| ||| || | ||||||||| ||||| | || | ||||| || | | || ||| Sbjct 4744076 ACCTACGACTCCCATAGGAGTTGGGCAATCCTTGGGCAGAGGAGGAAGGGTGCGTGTGTA 4744017 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 ||||||||||| ||| | |||||||||||| || || ||||| | ||| | | || Sbjct 4744016 GTAGGAGAGATTTGAGTAGGCTTCCCAGCTTTTATAATCATAGTCTGTATTGAAAGTCGG 4743957 Query 10409 AGGGCTGTCAATCAAAT 10425 ||||||||||||| || Sbjct 4743956 GGGGCTGTCAATCAGAT 4743940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 706468705313200