Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1 113 4e-20 seq11 107 2e-18 seq13 82.4 7e-11 seq3 82.4 7e-11 >seq1 Length=159038749 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| || | ||| | || | || || ||||| || | ||| || ||| | Sbjct 137746622 CCTCCCCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 137746563 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| || ||| ||||||| | | ||||| ||||| || Sbjct 137746562 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGG 137746503 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || |||||||| ||| |||||| | | || || Sbjct 137746502 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACC 137746443 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| || ||||| || || ||||||||||||||||| Sbjct 137746442 TCAAGGGTGATGGTCTTACCAGTTAGGGTCTTCACAAAGATCTGCAT 137746396 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||| || | || || ||||| || | ||| || ||| || ||| | | Sbjct 137747066 CGCAGGACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 137747007 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| ||||| ||||||| | | ||||| ||||| || || || || ||| Sbjct 137747006 TCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTG 137746947 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||||| ||| |||||| | | || || |||| |||||| Sbjct 137746946 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 137746887 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || ||||| || ||||||||||| Sbjct 137746886 GTCTTACCAGTCAGGGTTTTAACGAAGATCTGCAT 137746852 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| || | ||| | || | || || ||||| || | ||| || ||| | Sbjct 137746850 CCTCCCCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 137746791 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| || ||| ||||||| | | ||||| ||||| || Sbjct 137746790 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGG 137746731 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || |||||||| ||| |||||| | | || || Sbjct 137746730 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACC 137746671 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| || ||||| || ||||| || ||||||||||| Sbjct 137746670 TCAAGGGTGATGGTCTTACCAGTCAGGGTTTTAACGAAGATCTGCAT 137746624 >seq11 Length=93888508 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| || | ||| | || | || || ||||| || | ||| || ||| Sbjct 55250583 CCTCCCCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 55250642 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| ||| |||||||| || || | ||||| | | |||||| |||||||| Sbjct 55250643 AGAGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGTTGCTGGTCTGGAGGG 55250702 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| ||| |||||| | | ||||| Sbjct 55250703 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACC 55250762 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| ||||| ||||| || || || ||||||||||| Sbjct 55250763 TCTAGGGTGATGGTCTTTCCGGTAAGTGTCTTTACGAAGATCTGCAT 55250809 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| || | ||| | || | || || ||||| || | ||| || ||| Sbjct 55250355 CCTCCCCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG-- 55250412 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || || || ||| |||||||| || || | ||||| | | ||||| ||||| | Sbjct 55250413 AGAGCGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGG 55250472 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || || || ||||| | || || |||||||| ||| |||||| | | || | Sbjct 55250473 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCA 55250532 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | |||||||| || || ||||| || ||||||||||||||||| Sbjct 55250533 CCTCTAGGGTGATGGTCTTGCCGGTAAGGGTCTTCACAAAGATCTGCAT 55250581 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| || | ||| | || | || || |||||||| | ||| || ||| Sbjct 55250127 CCTCCCCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGG-- 55250184 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || || || ||| |||||||| || || | ||||| | | ||||| ||||| | Sbjct 55250185 AGAGCGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGG 55250244 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCG 94957 | || || || ||||| | || || |||||||| ||| ||||| || || || Sbjct 55250245 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC-GCTCGGCTCA 55250303 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | |||||||| || ||||| || || ||||| ||||||||||| Sbjct 55250304 ACCTCCAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 55250353 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||| || | ||| || ||||| || | ||| || ||| | |||| | Sbjct 55249911 CGCAGGACCAGATGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCA 55249970 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || | ||||| | | ||||| ||||| || || || || ||| Sbjct 55249971 TCTTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTG 55250030 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| ||| |||||| | || || || | |||||| Sbjct 55250031 TCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTCGGCTCAACCTCCAGGGTGATG 55250090 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || ||||| ||||||||||| Sbjct 55250091 GTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 55250125 >seq13 Length=107758822 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 |||||| || | ||||| ||| | || | || ||||| || || | ||| || || Sbjct 72692164 TCCTCCCCTGAGTCGCAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCTGA 72692223 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 | ||| | ||| |||||||| || ||| | ||||| | || ||||| ||||| || Sbjct 72692224 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGCGG 72692283 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGA 94958 || || || ||||| | || || ||||| || | | ||||| || ||| || | Sbjct 72692284 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC-GCTTGGCTCAA 72692342 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | |||||||| || || || || || || || ||||||||||| Sbjct 72692343 CCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 72692391 >seq3 Length=92503428 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 94885 TTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGT 94944 ||||||| | ||| ||||||||||||| | ||| || ||||| || ||| || Sbjct 13747322 TTGCTGAGATTGAGTGTTACCTTCTTTGTCTTGAATCTTGGCCTTCACATTCTCGATGGT 13747381 Query 94945 GTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTG 95004 |||| | | || || |||| ||||||||||| || || | ||||||||||||||||| Sbjct 13747382 GTCACTGGGTTCCACCTCAAGGGTGATGGTTTTACCCGTCAACGTTTTCACAAAGATCTG 13747441 Query 95005 CAT 95007 ||| Sbjct 13747442 CAT 13747444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446990286955800