Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq11 93.3 4e-14 seq23 86.0 6e-12 >seq11 Length=93888508 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| ||||| | || ||||| ||| | || ||||| | |||||| | || | || | Sbjct 55250813 CAAGATGCAGATCTTCGTAAAGACACTTACCGGAAAGACCATCACCCTAGAGGTCGAGCC 55250754 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 | |||||||||||| | ||||| ||||| ||||| || || || ||||| || Sbjct 55250753 CAGTGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAGA 55250694 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 || ||| | || || | || ||||| || || ||||||| | | | || |||||| Sbjct 55250693 CCAGCAACGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTCTCCGACTA 55250634 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || || || || ||||||| || || | || || ||||| Sbjct 55250633 CAACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTGAGGGGAGG 55250583 >seq23 Length=49854004 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| ||||| | || || || || || || || ||| | |||||| | || | || | Sbjct 40743962 CAAGATGCAGATATTCGTGAAGACGTTGACGGGGAAAACAATCACCCTTGAGGTTGAGCC 40744021 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 | ||| || || || | ||||| ||||| || || ||||| || ||||| || Sbjct 40744022 CAGCGATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGA 40744081 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAC--GTCAGCGAC 26942 ||| || | || || | || ||||||||||| || |||| | | | | |||| ||| Sbjct 40744082 TCAGCAGCGTCTGATCTTCGCTGGCAAACAACTTGAGGATGGTCGCACCTTGTCA--GAC 40744139 Query 26943 TATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| || ||||| || || | ||||| || ||| | ||| | ||||| Sbjct 40744140 TATAACATCCAGAAAGAGTCCACCCTTCATCTTGTGCTGCGTCTTCGTGGAGG 40744192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477273351631600