Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq11 96.9 3e-15 seq1 96.9 3e-15 >seq11 Length=93888508 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || ||||| ||| | || ||||| | || ||| | || |||||| | Sbjct 55250813 CAAGATGCAGATCTTCGTAAAGACACTTACCGGAAAGACCATCACCCTAGAGGTCGAGCC 55250754 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || |||||||||||| | ||||| ||||| ||||| || ||||| ||||| || Sbjct 55250753 CAGTGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAGA 55250694 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || || | ||||| | || |||||||| || ||||||| | | || ||| || Sbjct 55250693 CCAGCAACGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTCTCCGACTA 55250634 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || || || || | ||| | ||| | | |||| ||||| Sbjct 55250633 CAACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTGAGGGGAGG 55250583 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| | || || ||| | | | Sbjct 55250353 ATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACCCTGGAGGTTGAGCCGAGC 55250294 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| || ||||| || || || || Sbjct 55250293 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 55250234 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || |||||||| || ||||||| | | || ||| || ||| Sbjct 55250233 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACGCTCTCCGACTACAAC 55250174 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||| || || || | ||| | ||| | | |||| ||||| Sbjct 55250173 ATCCAAAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTGAGGGGAGG 55250127 >seq1 Length=159038749 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | ||||| || || ||||||| || | || ||| | || || ||| | Sbjct 137746392 CAAGATGCAGATCTTTGTGAAGACCCTAACTGGTAAGACCATCACCCTTGAGGTTGAGCC 137746451 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || |||||||||||| | ||||| ||||| ||||| || ||||| || || || Sbjct 137746452 CAGTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGA 137746511 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||| | ||||| | | ||||||||| || ||||||| | | | | | ||| || Sbjct 137746512 CCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTA 137746571 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || || || || | ||| | ||| | | |||| ||||| Sbjct 137746572 CAACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTGAGGGGAGG 137746622 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | ||||| || | || ||| | || || ||| ||| Sbjct 137746624 ATGCAGATCTTCGTTAAAACCCTGACTGGTAAGACCATCACCCTTGAGGTTGAGCCCAGT 137746683 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| || ||||| || || || || Sbjct 137746684 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 137746743 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | | ||||||||| || ||||||| | | | | | ||| || ||| Sbjct 137746744 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 137746803 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || || || | ||| | ||| | | |||| ||||| Sbjct 137746804 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTGAGGGGAGG 137746850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428719543784025