Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq13 104 2e-17 >seq1 Length=159038749 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || ||||| ||||||| | || || ||| | | Sbjct 137746396 ATGCAGATCTTTGTGAAGACCCTAACTGGTAAGACCATCACCCTTGAGGTTGAGCCCAGT 137746455 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || || || ||||| Sbjct 137746456 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 137746515 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | ||||||| ||||| || ||| ||||| Sbjct 137746516 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 137746575 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || ||| | ||||| | || || ||||| Sbjct 137746576 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTGAGGGGAGG 137746622 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || |||| ||||| ||||||| | || || ||| | | Sbjct 137746624 ATGCAGATCTTCGTTAAAACCCTGACTGGTAAGACCATCACCCTTGAGGTTGAGCCCAGT 137746683 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || || || ||||| Sbjct 137746684 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 137746743 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | ||||||| ||||| || ||| ||||| Sbjct 137746744 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 137746803 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || ||| | ||||| | || || ||||| Sbjct 137746804 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTGAGGGGAGG 137746850 >seq13 Length=107758822 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| |||| || ||| | Sbjct 72692619 ATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCAAGC 72692560 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| || || || || || ||||| Sbjct 72692559 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAG 72692500 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || |||||||| || | ||||||| ||||| | |||||||| Sbjct 72692499 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCAGATTACAAC 72692440 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||||||||| || ||| | ||||| | || || ||||| Sbjct 72692439 ATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTCAGGGGAGG 72692393 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| |||| || ||| | Sbjct 72692391 ATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCAAGC 72692332 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| || || || || || ||||| Sbjct 72692331 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAG 72692272 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || |||||||| || | ||||||| ||||| | || ||||| Sbjct 72692271 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCAGACTACAAC 72692212 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 || || ||||||||||| || ||| | ||||| | || || |||||| Sbjct 72692211 ATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGACTCAGGGGAGGA 72692164 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| |||| || ||| | Sbjct 72692847 ATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCAAGC 72692788 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| || || || || || ||||| Sbjct 72692787 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAG 72692728 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || |||||||| || | ||||||| ||||| | || ||||| Sbjct 72692727 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCAGACTACAAC 72692668 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||||||||| || ||| | ||||| | || || ||||| Sbjct 72692667 ATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTCAGGGGAGG 72692621 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| |||| || ||| | Sbjct 72693075 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCAAGC 72693016 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| || || || || || ||||| Sbjct 72693015 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAG 72692956 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || |||||||| || | ||||||| ||||| | || ||||| Sbjct 72692955 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCAGACTACAAC 72692896 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||||||||| || ||| | ||||| | || || ||||| Sbjct 72692895 ATCCAGAAAGAATCCACCCTCCATCTTGTGCTGCGTCTCAGGGGAGG 72692849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432101946496325