Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq23 111 1e-19 seq13 86.0 5e-12 >seq23 Length=49854004 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114152 AATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211 ||| || ||||| || | || || | ||| | || || ||||| || ||||| || || Sbjct 40744196 AATGCCTCCACGAAGACGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTC 40744137 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 || || ||| ||| ||||||||||| |||||| |||| |||||||| || || || Sbjct 40744136 TGACAAGGTGCGACCATCCTCAAGTTGTTTGCCAGCGAAGATCAGACGCTGCTGATCAGG 40744077 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 |||||||||||| || || ||||| || | | ||||| || ||| ||| || Sbjct 40744076 AGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCGCTGGGCTC 40744017 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| || |||| || || || || |||||||| Sbjct 40744016 AACCTCAAGGGTGATTGTTTTCCCCGTCAACGTCTTCACGAATATCTGCAT 40743966 >seq13 Length=107758822 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | || || | ||| | || |||||||| || ||||||||||| Sbjct 72692390 ATACCTCCCCTGAGACGCAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAATCT 72692449 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || |||||| || || || || ||| |||| || | ||| ||||| || Sbjct 72692450 GAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGC 72692509 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| ||||| || | | |||| ||||||| | | || Sbjct 72692510 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTTGGCTCA 72692569 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| ||||| || || || || |||||||| Sbjct 72692570 ACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 72692619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418945676323860