Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq13 120 6e-22 seq4 118 2e-21 seq6 111 3e-19 seq15 102 2e-16 seq14 87.8 3e-12 >seq13 Length=107758822 Score = 120 bits (132), Expect = 6e-22 Identities = 99/119 (83%), Gaps = 4/119 (3%) Strand=Plus/Plus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| || | ||||||||| ||||||||||| |||||||||||| |||||||||| Sbjct 78356135 CACCTCATCATGGCTGGTGTACTCTACAATCTCGGTACAGAGGTTACTGGACTTGATGGT 78356194 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGC--GTTGCAGGCGTCCTTGTAGAGCATGAAGGG 244821 ||||||| ||| || || |||| | ||||||||||||||||||||||||| |||| Sbjct 78356195 TCCCAGGTTCTGATGGTT--ACTTTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGG 78356251 Score = 100 bits (110), Expect = 5e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGG-GCCAGCTT 244380 || |||||||||||| ||| |||||| |||||| ||| || | | ||||||| Sbjct 78350054 CCTTTGCTGACGGGGGAGCCTGGGTAGGTTTGGTAGGCACCAA-GCTCAGCAGCCAGCTC 78350112 Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCG 244440 |||||| || |||| || |||||||||||||| || ||| |||| | | | Sbjct 78350113 ACAGCTGGACTCCAGGGAAGCATAGTAGATGGTCTCAAATATCTGAGTGTTGAGCTTCTG 78350172 Query 244441 GGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCAC 244500 ||||| | | ||||||| | ||||| |||||| | || ||||| ||||| || Sbjct 78350173 GGCCTCAGCACTCTCAAAGGGGAAACGCATCAGAATGAAGGCATCAGCCAGACCCTGGAC 78350232 Query 244501 GCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534 || || || ||||| ||||| |||||||||||| Sbjct 78350233 ACCAATACCAATGGGCCTGTGGCGCTTGTTGGAG 78350266 >seq4 Length=82398023 Score = 118 bits (130), Expect = 2e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGG-GCCAGCTT 244380 || |||||||| ||| ||| ||||||| ||||| |||| || | | || |||| Sbjct 46252093 CCTTTGCTGACAGGGGAGCCTGGGTAGGTCTCGTAGGCACCGA-GCTCAGCAGCAAGCTC 46252035 Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCG 244440 |||||| || ||||| ||||||||||||||||| |||||| |||| | | | Sbjct 46252034 ACAGCTGGACTCCAGGGCAGCGTAGTAGATGGTCTCAAAGATCTGAGTGTTGAGCTTCTG 46251975 Query 244441 GGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCAC 244500 ||||| | ||| ||||||| | ||||| ||||| | || || || |||||||| Sbjct 46251974 GGCCTCGGCGCTCTCAAAGGGGAAACGCATCAGGATGAAAGCATCAGCAAGACCCTGCAC 46251915 Query 244501 GCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534 ||||| || ||||| ||||| |||||||||||| Sbjct 46251914 ACCGATACCAATGGGCCTGTGGCGCTTGTTGGAG 46251881 Score = 114 bits (126), Expect = 2e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 || |||| |||||||||||| |||||||| | | | | ||| || || |||| ||||||| Sbjct 46250435 ACTCTCTTCATGAAGAGGTCAGGGATCCACATGCCGTAGAACAGATCTCTGGCCCTCTGC 46250376 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| || ||||||||| |||| ||||| |||||||| || || | |||||| ||| Sbjct 46250375 TCTTCCTTCCCTGTGTTCTTCTTCAGGTCCAAGAAGTCAAACACATCAAAGTGCCACGGC 46250316 Query 245123 TCCATGTA 245130 |||| ||| Sbjct 46250315 TCCAGGTA 46250308 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||| |||||||| || || || | ||| ||||| ||||||| || |||||||| Sbjct 46252580 ACCTGGAACTCTCCAGAGAGGACTCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGATA 46252521 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||||||||| ||||| || || || || |||||||| | || ||||||| Sbjct 46252520 GACTCGTTGTTGCCCAGGATCTGGGCTGTAGAGGCCGTGGGCATGGGGGCCAGCAGCAGA 46252461 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||||||| |||||||| Sbjct 46252460 CTGTTCCTCACACCGTGCCT 46252441 Score = 104 bits (114), Expect = 4e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| || | ||||||||| ||||| || || || ||||||||| |||| ||||| Sbjct 46251008 CACCTCATCATGGCTGGTGTACTCTACAATTTCAGTACAAAGGTTACTGGACTTAATGGT 46250949 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGG 244821 |||||||| ||| |||||| ||| |||||| ||||||||||| ||||| |||| Sbjct 46250948 GCCCAGGTTCTGCTGATTGCTCTTCCTGTTGCATGCGTCCTTGTAAAGCATATAGGG 46250892 Score = 98.7 bits (108), Expect = 2e-15 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 244720 GGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTG 244779 |||||||| ||||| ||||| || ||||||||| |||| ||||||||||||| ||| || Sbjct 48906077 GGTGTACTCTACAATTTCGGTACAAAGGTTACTGGACTTAATGGTGCCCAGGTTCTGCTG 48906136 Query 244780 ATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGG 244821 |||| ||| |||||| ||||||||||| | ||| |||| Sbjct 48906137 ATTGCTCTTCCTGTTGCATGCGTCCTTGTAAATCATATAGGG 48906178 >seq6 Length=87043187 Score = 111 bits (122), Expect = 3e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| | || || ||||| |||||||| || ||| |||| || |||| |||| Sbjct 51008416 TGGTTGCCTTTGCAGCTGTTGAGGGGATCTTCTTTTCTGGCTCCTTTGCTGCCATTTTCT 51008475 Query 42766 GGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 |||| ||| ||| || | ||||| || || |||||||| ||||| ||||||||||| | Sbjct 51008476 GGCTAAAGAAGAGGGGGCTCATGCCAGGCCTAACCTTCTCCAACGAGCTCATCAGCAGAG 51008535 Query 42826 ACGAGG 42831 |||||| Sbjct 51008536 ACGAGG 51008541 >seq15 Length=103963436 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| || ||| | || || ||||| ||||||||||| || |||| || |||| |||| Sbjct 25930784 TGGTTGCATTTGCGGCTGTTGAGGGGATCTTCTTCTCTGGGTCCTTTGCTGCCATTTTCT 25930843 Query 42766 GGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 |||| ||| ||| || | ||||| || || |||||||| || || ||||||||||| | Sbjct 25930844 GGCTGAAGAAGAGGGGGCTCATGCCTGGCCTGACCTTCTCAAATGAGCTCATCAGCAGAG 25930903 Query 42826 ACGAGG 42831 |||||| Sbjct 25930904 ACGAGG 25930909 >seq14 Length=93901823 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||| || | || || || | || || |||||||||||||||||||| | || || Sbjct 93501873 GGGGAGCGGATAGTGGCGTTCGCTGCAGTGGAGGGCATCTTCTTCTCGGGGTCGTTTGCA 93501932 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || | ||| | ||| ||| ||| | |||||| || ||||||| ||| ||||| || Sbjct 93501933 GCTATTTATTGGTTGAAGAAGAGAGGCCT-GATGCCTGGGCTCACCTACTCCAACGAGCT 93501991 Query 42815 CATCAGCAGGGACGAGG 42831 ||||||||| ||||||| Sbjct 93501992 CATCAGCAGAGACGAGG 93502008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 941598786662800