Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq116332 737 0.0 >seq116332 Length=7628 Score = 737 bits (816), Expect = 0.0 Identities = 886/1193 (74%), Gaps = 16/1193 (1%) Strand=Plus/Minus Query 26206 AAAAGGGTTCATCGAGGAATTCCGGGGAACGCGGCGCGGATCTTGAGGAAGAAGTATTCC 26265 |||| ||||||||||||||| |||||||| || | |||||||||||||||||||| ||| Sbjct 3200 AAAAAGGTTCATCGAGGAATACCGGGGAATGCAGACCGGATCTTGAGGAAGAAGTACTCC 3141 Query 26266 TCGTCGCGGTACCCGTAAGCCCGACGTTTGATGACCTTGATGGTGTTGTTGATGCCTTCG 26325 | |||||||| ||||| || || || |||||||| |||||||||||||||||||| ||| Sbjct 3140 TGATCGCGGTAGCCGTAGGCGCGGCGCTTGATGACTTTGATGGTGTTGTTGATGCCCTCG 3081 Query 26326 ACGACGCTGGTGTTGAGCGGGTGGCGGCAGCGGGCCAGAATTCCATGCCAGTAGCCCTCC 26385 |||| ||||||||||||| ||||||| ||||| | |||||| || ||| ||| | | Sbjct 3080 ACGATGCTGGTGTTGAGCCGGTGGCGACAGCGAGACAGAATCCCGTGCAGATAGGCTTTT 3021 Query 26386 AGGCGCTGGGCGAACAGTTGCAAAGCGGCGATCCCGCTTTGCCGAGCCTGCTCAAACCAT 26445 || | ||||| | ||| |||||||| ||||| | ||||||| | | ||| Sbjct 3020 AGCTTGAGCGCGAAGTGAGCCAAGGCGGCGATGCCGCTGCCCTGAGCCTGTTGCAGCCAG 2961 Query 26446 TGTTCCCAGGCCTTTTGCGCCCAGGCCGGTCTGC-GGTAAAACCAGAGCCGTTTCAACTC 26504 || ||||| |||| | || || |||| || |||| ||||| ||| |||| | ||| Sbjct 2960 TGATCCCATGCCTGGCGGGCGTAG-CCGGGGTGTTGGTAGAACCACAGCTGTTTGAGCTC 2902 Query 26505 GTCGCGCAGCACGTAGACGCATAACAGCGACTGATTGGCGGCCAGCAGCTCCTTCAGGTG 26564 ||||||| || || || | || | ||| ||||| |||| ||| | || | Sbjct 2901 ATCGCGCATCAGATAAGCGGTGAGCAAGGGCTGGTTGGCCTGGAGCAACTCGTCCAACTT 2842 Query 26565 CACGGCCTGCTCTGGCTTCAGATTGTGGCGCTTGCGTAGCAACAGCCACCGGCTGGACTT 26624 || | || || | || || | ||| ||||| |||| ||||| || |||||||| Sbjct 2841 TACCGATTGGCACGGATCGAGGTTTTTGCGATTGCGCAGCAGTAGCCAGCGACTGGACTT 2782 Query 26625 CAGAACCTTCCGGGCCGGCTTGTCATGCCGGAGTTGATTGGCCTGATCCACCCGCACCCG 26684 | ||| |||||||||||||| ||||| | || || || || || || |||||||| Sbjct 2781 GATCACCCGGCGGGCCGGCTTGTCGTGCCGCAACTGGTTCGCTTGGTCTACACGCACCCG 2722 Query 26685 GTCGATCACCTCACGCCCATACTTGGCCACGACGTGGAACAAGTCGTAGACCACCTCGGC 26744 ||| ||||| ||||| || |||||||||||||||||||||| ||||||||| | |||||| Sbjct 2721 GTCTATCACTTCACGGCCGTACTTGGCCACGACGTGGAACAGGTCGTAGACGATCTCGGC 2662 Query 26745 CTGCGGGCAATGCGCGTTGATCTCCAGTTCGTAGGCGGTCGTCATGTCGATTGCCACCGC 26804 | ||||| | || | ||||||||| || ||||| |||||||||||||| || || || Sbjct 2661 GTTGGGGCAGTTGGCCTGGATCTCCAGCTCATAGGCCGTCGTCATGTCGATCGCTACGGC 2602 Query 26805 CTCGATGCGCTGGGCAACGCCCTCCGGAAGCTGTTCGAAGAAGGCGCGGGCAGTCTCGCG 26864 | ||| |||||||||| || || || |||||||||||||| | ||| |||||||| Sbjct 2601 CCGGATCTGCTGGGCAACTCCTGTTGGCAGTTGTTCGAAGAAGGCTCTGGCCGTCTCGCG 2542 Query 26865 CGAGCGCCCCGGCCCGATCCAGAGCACCTGCCGGCCGATCGGATCAACGACCACCGTGGC 26924 |||||| || |||||||| |||||||| |||| ||||||||| || || |||||||| Sbjct 2541 CGAGCGGCCATCACCGATCCATAGCACCTGACGGCGGATCGGATCGACAACGACCGTGGC 2482 Query 26925 ATAGCGATGGCCTTTATGGAGTGCGAACTCGTCCATCGCCAGATAACGGATCGTCGACCA 26984 ||| |||||||| || || || ||||||||||||||||| || || ||||| ||| Sbjct 2481 ATAACGATGGCCCTTGTGTAGAGCGAACTCGTCCATCGCTAGGTAGTGGATCTGGCTCCA 2422 Query 26985 GTCCGG---TTCGACCACACGCGCTCGCA--AGCGCATCTTGTCGATCGATTTGACCGTG 27039 |||||| || || | | || ||||| || || |||||| | || ||||||||| Sbjct 2421 GTCCGGCTCTTGGATCGCCCG---TCGCAGCAGGGC--CTTGTCCAGCGCCTTGACCGTG 2367 Query 27040 TGCCAGCCCAGATCGTAGAA-CGCGGCCACCGCCTGTACGCTGCTCGACTGCAGCAGCTT 27098 ||||| ||||| | | |||| ||| ||||| ||| | | | |||| |||| |||| || Sbjct 2366 TGCCAACCCAGTTGGAAGAAGCGC-GCCACGGCCAGAATGTTGCTGGACTCAAGCAACTG 2308 Query 27099 CTCGCAGGCCTCGGCGAATCGCTGCGTCACTCTCTGGTAGCGGCCCAGCCAGTCCAGCTT 27158 | |||||||| | || | ||||||| |||||| |||||||||||| |||| | Sbjct 2307 GCTGACCGCCTCGGCCAGCCGGTCGGTCACTCGCTGGTAACGGCCCAGCCAGCTCAGCCT 2248 Query 27159 CTCCAGCCGAGGTCCGCCACAACGCTCGCACCACACGCGCCGGCGTGGGACGTGCAGCAC 27218 |||||| | ||||| || || |||||||||| || ||||| || || || |||| Sbjct 2247 CTCCAGATGCGGTCCACCGCACTGCTCGCACCAGACCCGCCGACGCGGCACTACCAGCGT 2188 Query 27219 CACCCGGTACTCGAAGAGCGGCAGATCACGTACCCGCCGAGCTGTCGTCTCATGAATCTG 27278 ||| || | | | ||||||||||| || ||||| || | ||||||||||| | ||| Sbjct 2187 CACTCGCAGCGCCATTAGCGGCAGATCCCGCACCCGGCGCGTGGTCGTCTCATGCACCTG 2128 Query 27279 CGAGCAACGCGTTCCGCATTGCTCACAGTGCAT-GACCTTGCTGACTGGCTTCAGATAGA 27337 | || || | ||||| ||||| |||||||| | | ||||| |||||||| || | Sbjct 2127 CCGACATCGGTTGCCGCAGTGCTCGCAGTGCATCGTTCGCGCTGA-AGGCTTCAGGTAAA 2069 Query 27338 GCGATAGCGTGCGGCTCTCGCCTTGCGGCCACTCCACGCGCTCCAGGCGGTAA 27390 || | ||| |||||||| |||| |||||| | || ||||||| || ||| Sbjct 2068 TCGTGACCGTCCGGCTCTCACCTTCAGGCCACACGACCCGCTCCACCCGATAA 2016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123568798775420