Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq15 116 4e-21 seq4 100 3e-16 seq6 98.7 1e-15 seq14 84.2 3e-11 >seq15 Length=103963436 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| ||||| |||||| ||| || |||||||| |||| ||||| Sbjct 25930909 CCTCGTCTCTGCTGATGAGCTCATTTGAGAAGGTCAGGCCAGGCATGAGCCCCCTCTTCT 25930850 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 ||| ||||||||| ||| ||| || || ||||||||||| ||||| ||| ||| || | Sbjct 25930849 TCAGCCAGAAAATGGCAGCAAAGGACCCAGAGAAGAAGATCCCCTCAACAGCCGCAAATG 25930790 Query 126186 CAAAGAGACGCTCA 126199 ||| | ||||||| Sbjct 25930789 CAACCACACGCTCA 25930776 >seq4 Length=82398023 Score = 100 bits (110), Expect = 3e-16 Identities = 118/158 (75%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 114499 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTG 114556 |||||| | | |||||||||| |||||| ||||| | || || ||| |||||||| Sbjct 48906065 CTCATCATGGCCGGTGTACTCTACAATTTCGGTACAAAGGTTACTGGACT--TAATGGTG 48906122 Query 114557 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 114616 |||| ||||| ||||| ||| |||| || || |||||||||| ||| || || || Sbjct 48906123 CCCAGGTTCTGCTGATTGCTCTTCCTGTTGCATGCGTCCTTGTAAATCATATAGGGGGTA 48906182 Query 114617 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGAC 114654 |||||||| || ||||||| | ||| || | ||| || Sbjct 48906183 CCCGTCTCAGTCTGGGACTCAATAATGGCATGCCACAC 48906220 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/145 (76%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 114512 GTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTT 114569 |||||||||| |||||| ||||| | || || ||| |||||||||||| ||||| | Sbjct 46250992 GTGTACTCTACAATTTCAGTACAAAGGTTACTGGACT--TAATGGTGCCCAGGTTCTGCT 46250935 Query 114570 GATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTT 114629 |||| ||| |||| || || |||||||||||||| || || || ||||| || || | Sbjct 46250934 GATTGCTCTTCCTGTTGCATGCGTCCTTGTAAAGCATATAGGGGGTACCCGTTTCAGTCT 46250875 Query 114630 GGGACTTGAGAATAGCCTTCCAGAC 114654 |||||| | ||| || | ||| || Sbjct 46250874 GGGACTCAATAATGGCATGCCACAC 46250850 >seq6 Length=87043187 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || |||||| || ||||||||||| |||| ||||| Sbjct 51008541 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTTAGGCCTGGCATGAGCCCCCTCTTCT 51008482 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 | | ||||||||| ||| ||| || || || |||||||| ||||| ||| || || | Sbjct 51008481 TTAGCCAGAAAATGGCAGCAAAGGAGCCAGAAAAGAAGATCCCCTCAACAGCTGCAAAGG 51008422 Query 126186 CAAAGAGACGCTCA 126199 ||| | ||||||| Sbjct 51008421 CAACCACACGCTCA 51008408 >seq14 Length=93901823 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || ||| || || || ||||| || || | ||||| Sbjct 93502008 CCTCGTCTCTGCTGATGAGCTCGTTGGAGTAGGTGAGCCCAGGCATCAGGCCTCTCTTCT 93501949 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 ||||||| |||| || ||| || |||||||||||||| |||||||| ||||||| Sbjct 93501948 TCAACCAATAAATAGCTGCAAACGACCCCGAGAAGAAGATGCCCTCCACTGCAGCGAACG 93501889 Query 126186 C 126186 | Sbjct 93501888 C 93501888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595620117187400