Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq4 111 2e-19 seq13 100 3e-16 >seq4 Length=82398023 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 |||||||||| ||| ||||| |||||||||||||||||||||| || || |||||| Sbjct 46252444 CACGGTGTGAGGAACAGTCTGCTGCTGGCCCCCATGCCCACGGCCTCTACAGCCCAGATC 46252503 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || |||||||||||||| |||| |||| |||| |||| | |||| | | | || ||| Sbjct 46252504 CTGGGCAACAACGAGTCTATCGAGCCCTACACCAGCAACATCTACACCCGCAGAGTCCTC 46252563 Query 95197 GCCGGGGAATTCCCCGTCA 95215 | || || |||| |||| Sbjct 46252564 TCTGGAGAGTTCCAGGTCA 46252582 >seq13 Length=107758822 Score = 100 bits (110), Expect = 3e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 95096 TGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGT 95155 |||| ||||||||||||||||||||||||| || |||||||| |||||||||||||| Sbjct 78349680 TGCTGCTGGCCCCCATGCCCACGGCCTCCACAGCTCAGATCCTGGGCAACAACGAGTCCA 78349621 Query 95156 TCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCA 95215 |||| |||| |||| ||| | |||| | | | || ||| | || || |||| |||| Sbjct 78349620 TCGAGCCCTACACCAGTAACATCTACACCCGCAGAGTCCTCTCTGGAGAGTTCCAGGTCA 78349561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493287544193800