Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 seq11 89.7 5e-13 seq4 86.0 6e-12 >seq1 Length=159038749 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||||| || | ||| | | | |||||||| || |||||||||||| Sbjct 137747079 GCCTCCACGAAGACGCAGGACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 137747020 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || || || || || | | |||| |||||||| ||||| || || Sbjct 137747019 CAGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGGGG 137746960 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | |||||| | | ||| || Sbjct 137746959 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCAAC 137746900 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || ||||||||||| ||||| || || |||||||| Sbjct 137746899 CTCAAGGGTGATGGTCTTACCAGTCAGGGTTTTAACGAAGATCTGCAT 137746852 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | || ||| | || | ||| | | | |||||||| || |||||||||||| | Sbjct 137746850 CCTCCCCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 137746791 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || |||| | |||| |||||||| ||||| || || Sbjct 137746790 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGG 137746731 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||| | | ||| ||| Sbjct 137746730 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACC 137746671 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || ||||||||||| ||||| || || |||||||| Sbjct 137746670 TCAAGGGTGATGGTCTTACCAGTCAGGGTTTTAACGAAGATCTGCAT 137746624 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | || ||| | || | ||| | | | |||||||| || |||||||||||| | Sbjct 137746622 CCTCCCCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 137746563 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || |||| | |||| |||||||| ||||| || || Sbjct 137746562 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGG 137746503 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||| | | ||| ||| Sbjct 137746502 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACC 137746443 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || |||||||| || || || ||||| |||||||| Sbjct 137746442 TCAAGGGTGATGGTCTTACCAGTTAGGGTCTTCACAAAGATCTGCAT 137746396 >seq11 Length=93888508 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | || ||| | || | ||| | | | ||||||||||| |||||||||||| Sbjct 55250127 CCTCCCCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAG 55250186 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || || | |||| |||||||| ||||| || || Sbjct 55250187 AGCGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGG 55250246 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | ||||||| ||| ||| ||| Sbjct 55250247 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTCGGCTCAACC 55250306 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || ||||||||||| || || || || |||||||| Sbjct 55250307 TCCAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 55250353 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||||| || | ||| | | |||||||| || |||||||||||| Sbjct 55249898 GCCACCACGGAGACGCAGGACCAGATGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 55249957 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || || || || || || || | |||| || ||||| ||||| || || Sbjct 55249958 GAGAGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCTGGGGG 55250017 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | |||||| ||| ||| || Sbjct 55250018 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTCGGCTCAAC 55250077 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || ||||||||||| || || || || |||||||| Sbjct 55250078 CTCCAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 55250125 >seq4 Length=82398023 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458 ||||| || | ||| | | | ||||| || || |||||||||||| | || || Sbjct 51881052 ACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCC 51880993 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 ||| || || || || |||| |||| |||||||| ||||| || || || || || || Sbjct 51880992 GTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTT 51880933 Query 138519 GTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 ||| ||| || || | | || | |||||| | | ||||||||| | || | Sbjct 51880932 GTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTAT 51880873 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||||||| || || || || || || ||||||||| || Sbjct 51880872 GGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCATGCCT 51880833 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458 ||||| || | ||| | | | ||||| || || |||||||||||| | || || Sbjct 51881280 ACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCC 51881221 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 ||| || || || || |||| |||| |||||||| ||||| || || || || || || Sbjct 51881220 GTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTT 51881161 Query 138519 GTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 ||| ||| || || | | || | |||||| | | ||||||||| | || | Sbjct 51881160 GTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTAT 51881101 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||||||| || || || || || || ||||||||| || Sbjct 51881100 GGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCATGCCT 51881061 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458 ||||| || | ||| | | | ||||| || || |||||||||||| | || || Sbjct 51881508 ACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCC 51881449 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 ||| || || || || |||| |||| |||||||| ||||| || || || || || || Sbjct 51881448 GTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTT 51881389 Query 138519 GTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 ||| ||| || || | | || | |||||| | | ||||||||| | || | Sbjct 51881388 GTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTAT 51881329 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||||||| || || || || || || ||||||||| || Sbjct 51881328 GGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCATGCCT 51881289 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458 ||||| || | ||| | | | ||||| || || |||||||||||| | || || Sbjct 51881736 ACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCC 51881677 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 ||| || || || || |||| |||| |||||||| ||||| || || || || || || Sbjct 51881676 GTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTT 51881617 Query 138519 GTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 ||| ||| || || | | || | |||||| | | ||||||||| | || | Sbjct 51881616 GTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTAT 51881557 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||||||| || || || || || || ||||||||| || Sbjct 51881556 GGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCATGCCT 51881517 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458 ||||| || | ||| | | | ||||| || || |||||||||||| | || || Sbjct 51881964 ACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCC 51881905 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 ||| || || || || |||| |||| |||||||| ||||| || || || || || || Sbjct 51881904 GTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTT 51881845 Query 138519 GTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 ||| ||| || || | | || | |||||| | | ||||||||| | || | Sbjct 51881844 GTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTAT 51881785 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||||||| || || || || || || ||||||||| || Sbjct 51881784 GGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCATGCCT 51881745 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458 ||||| || | ||| | | | ||||| || || |||||||||||| | || || Sbjct 51882192 ACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCC 51882133 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 ||| || || || || |||| |||| |||||||| ||||| || || || || || || Sbjct 51882132 GTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTT 51882073 Query 138519 GTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 ||| ||| || || | | || | |||||| | | ||||||||| | || | Sbjct 51882072 GTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTAT 51882013 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||||||| || || || || || || ||||||||| || Sbjct 51882012 GGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCATGCCT 51881973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494822277531600