Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq23 96.9 2e-15 seq4 84.2 2e-11 seq13 82.4 5e-11 >seq23 Length=49854004 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAAT 15030 ||||||||| || ||||| || ||||| || || ||| || || | || || | | Sbjct 40744169 ATGAAGGGTGGACTCTTTCTGGATGTTATAGTC--TGACAAGGTGCGACCATCCTCAAGT 40744112 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 |||||||||||| | |||| |||||| || || ||||| |||||||| || || Sbjct 40744111 TGTTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATC 40744052 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 ||| || ||| |||| ||||||||||| || || || | ||| || ||||| || Sbjct 40744051 TTGGCCTTGACATTTTCAATAGTATCGCTGGGCTCAACCTCAAGGGTGATTGTTTTCCCC 40743992 Query 15151 GTCAGAGTTTTTACAAAAATTTGCATATT 15179 |||| || || || || || ||||| || Sbjct 40743991 GTCAACGTCTTCACGAATATCTGCATCTT 40743963 >seq4 Length=82398023 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || ||||| || |||||||| ||| ||| | | ||||||| | || Sbjct 51881040 ATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTG 51880981 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || ||| | |||| |||||| ||||| || || || |||||||| || || Sbjct 51880980 CTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTT 51880921 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || || || || || || || || | ||| ||||||||||| || Sbjct 51880920 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATGGTTTTACCGGT 51880861 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || ||||| Sbjct 51880860 GAGGGTCTTGACGAAGATCTGCAT 51880837 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || ||||| || |||||||| ||| ||| | | ||||||| | || Sbjct 51881268 ATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTG 51881209 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || ||| | |||| |||||| ||||| || || || |||||||| || || Sbjct 51881208 CTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTT 51881149 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || || || || || || || || | ||| ||||||||||| || Sbjct 51881148 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATGGTTTTACCGGT 51881089 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || ||||| Sbjct 51881088 GAGGGTCTTGACGAAGATCTGCAT 51881065 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || ||||| || |||||||| ||| ||| | | ||||||| | || Sbjct 51881496 ATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTG 51881437 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || ||| | |||| |||||| ||||| || || || |||||||| || || Sbjct 51881436 CTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTT 51881377 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || || || || || || || || | ||| ||||||||||| || Sbjct 51881376 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATGGTTTTACCGGT 51881317 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || ||||| Sbjct 51881316 GAGGGTCTTGACGAAGATCTGCAT 51881293 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || ||||| || |||||||| ||| ||| | | ||||||| | || Sbjct 51881724 ATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTG 51881665 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || ||| | |||| |||||| ||||| || || || |||||||| || || Sbjct 51881664 CTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTT 51881605 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || || || || || || || || | ||| ||||||||||| || Sbjct 51881604 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATGGTTTTACCGGT 51881545 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || ||||| Sbjct 51881544 GAGGGTCTTGACGAAGATCTGCAT 51881521 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || ||||| || |||||||| ||| ||| | | ||||||| | || Sbjct 51881952 ATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTG 51881893 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || ||| | |||| |||||| ||||| || || || |||||||| || || Sbjct 51881892 CTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTT 51881833 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || || || || || || || || | ||| ||||||||||| || Sbjct 51881832 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATGGTTTTACCGGT 51881773 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || ||||| Sbjct 51881772 GAGGGTCTTGACGAAGATCTGCAT 51881749 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || ||||| || |||||||| ||| ||| | | ||||||| | || Sbjct 51882180 ATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTG 51882121 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || ||| | |||| |||||| ||||| || || || |||||||| || || Sbjct 51882120 CTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTT 51882061 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || || || || || || || || | ||| ||||||||||| || Sbjct 51882060 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATGGTTTTACCGGT 51882001 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || ||||| Sbjct 51882000 GAGGGTCTTGACGAAGATCTGCAT 51881977 >seq13 Length=107758822 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || ||||| || ||||||||||| ||| | | | ||||| | || Sbjct 72692416 ATGGAGGGTGGATTCTTTCTGGATGTTGTAATCTGAGAGGGTGCGGCCATCTTCCAGCTG 72692475 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||| ||| | |||| | ||| ||||| || || || |||||||| || || Sbjct 72692476 CTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTT 72692535 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || || || ||||| || || || | ||| ||||| || ||||| Sbjct 72692536 GGCCTTCACATTCTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGGTCTTGCCTGT 72692595 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 ||| || || || || || |||||| Sbjct 72692596 CAGGGTCTTGACGAAGATCTGCATA 72692620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356380798984175