Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq23 82.4 7e-11 seq11 82.4 7e-11 >seq23 Length=49854004 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | || ||| ||||| || || || || || ||||| ||||| || Sbjct 40744195 ATGCCTCCACGAAGACGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTC- 40744137 Query 45171 CTGAC--GGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 |||| ||| | ||| || | |||||| || ||| | |||| || ||||| || | Sbjct 40744136 -TGACAAGGTGCGACCATCCTCAAGTTGTTTGCCAGCGAAGATCAGACGCTGCTGATCAG 40744078 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||||||||| ||||| || || || |||| ||| | || ||| | || Sbjct 40744077 GAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCGCTGGGCT 40744018 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || || || || | ||||| || || | || || || || || |||||| Sbjct 40744017 CAACCTCAAGGGTGATTGTTTTCCCCGTCAACGTCTTCACGAATATCTGCATC 40743965 >seq11 Length=93888508 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||| || || || ||||| ||||| || || ||| || || | ||| || Sbjct 55250600 CACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCTTC 55250659 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || || || ||| | |||| ||||||||||| || || ||||| || || || || Sbjct 55250660 CAGCTGCTTGCCAGCGAAGATCAGACGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTG 55250719 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || || |||| || | || | |||||| | |||||| || || || | || | Sbjct 55250720 GATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTCT 55250778 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | ||||| || || ||||| || || |||||| Sbjct 55250779 TTCCGGTAAGTGTCTTTACGAAGATCTGCATC 55250810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450691514963800