Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq3 145 1e-29 seq24 138 2e-27 seq20 131 2e-25 seq10 131 2e-25 seq14 129 8e-25 seq23 107 3e-18 >seq3 Length=92503428 Score = 145 bits (160), Expect = 1e-29 Identities = 217/308 (70%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785 ||| || || ||||| || || | | ||||| ||||||| || || || || | | Sbjct 14959717 GATGAGGCGTGTGGTCTGGAAAATGCGTTCGTCGTCCCATTCGGGATGCTCCTGCATCAT 14959658 Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845 || || ||||| | |||||||||||||||||| ||||||||||||||||| | ||| || Sbjct 14959657 GACGTCACAGACGCGGTTGTGTTCTCTCAGCCAGATGGTGGCGTACATCATGAGACCGGG 14959598 Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGC 9905 || | || || | || | ||||| || ||||| |||| ||| |||| | ||| | Sbjct 14959597 GACCAGGCCGAAAAGCTCGTGGCCCACAGCGAAGCGGTGATCCTCGAGCACGTGGGGTGG 14959538 Query 9906 ATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAAC 9965 ||| |||| | || ||| || || ||||| || | || || | | ||| Sbjct 14959537 ATAGTGCATCTCGACTCCAACCTCCTTTACCAATGGGGGGTAGACCTCGCCATTCACAAC 14959478 Query 9966 CTGATACTTCATCTTCCCATCCTTGAACAGACGCAGCTTATGCTGCTTCTCCAACGTTTC 10025 ||||||||||| || |||| ||||||| | | |||||| ||||| |||||| || || Sbjct 14959477 CTGATACTTCAGTTTGCCATTCTTGAACTGCCTCAGCTTGTGCTGTCTCTCCAGAGTGTC 14959418 Query 10026 GCCGTAGA 10033 || |||| Sbjct 14959417 TCCATAGA 14959410 Score = 107 bits (118), Expect = 3e-18 Identities = 123/162 (76%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 9568 TGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAAG-GC-GG 9625 |||||| |||| |||||||||||||| || || || |||||||||||||| ||| || || Sbjct 14960146 TGCCAGTGGTACAGGGTATTGAACTCAGCTGCAATACGGTTCTGGTACTGGAAGCGCTGG 14960087 Query 9626 TACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGA 9685 | ||||| | ||||||||| || | |||| ||||||||| ||||| || ||||||| Sbjct 14960086 T--TAAACAGGAGCTCCGGGTCGAACTTGAGCTTGAAGTGGTAGCCGCTCAGGTGCTGGA 14960029 Query 9686 CATACTGTGTGATTATAATGTTAATGGTTTCCCCGGTAATGA 9727 | || | ||| | || || ||||| || || | || || Sbjct 14960028 CGTAGTCCTCGATCACGATCTTTATGGTCTCGCCTGCAAGGA 14959987 >seq24 Length=48650976 Score = 138 bits (152), Expect = 2e-27 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 || ||||| |||||||| ||||||||| | ||||| ||||| ||| ||| || ||| Sbjct 26486909 CCTCCGAACGTGCTGGGCTTCCAGTACTCAGGGGAACAGATCGGGTTACCCAGAAGGCCT 26486968 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 |||| ||| ||||||||||||| ||| | |||||||| || || ||||| ||| || Sbjct 26486969 TTCAGGGAGAACGGAGCCCCCATCTCCACCATGCTCTCGCCAAATATGGCGTTGGGGCGT 26487028 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 | || || | |||| | ||| ||||| || | || |||| ||| |||||||| | Sbjct 26487029 GTCTTCTCCAGCATGAGGGCAGGGTAGAACTCCAGCGCATCGATGTCACCATAGAGCTCC 26487088 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTA 9176 |||| ||| |||||||||| |||||||| Sbjct 26487089 TCCAGCTCCCTGGCTATCTCCTCCTCACCTA 26487119 >seq20 Length=86795997 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 || || || |||||||| ||||||||| | ||||| |||||| ||| ||| || ||| Sbjct 17085562 CCTCCAAATGTGCTGGGCTTCCAGTACTCAGGGGAACAGATGGGGTTACCCAGAAGGCCT 17085503 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 |||| ||| || |||||||||| ||| | ||||||||||| || ||||| ||| || Sbjct 17085502 TTCAGGGAGAATGGAGCCCCCATCTCCACCATGCTCTCACCAAATATGGCGTTGGGGCGT 17085443 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 | || || | |||| | ||| ||||| || | || || | ||| |||||||| | Sbjct 17085442 GTCTTCTCCAGCATGATGGCAGGGTAGAACTCCAGCGCATCAATGTCACCATAGAGCTCC 17085383 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 |||| ||| |||||||||| ||||||| Sbjct 17085382 TCCAGCTCCCTGGCTATCTCCTCCTCACCT 17085353 >seq10 Length=116138521 Score = 131 bits (144), Expect = 2e-25 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||||| || | |||||| || || | | |||||| ||||||||||| ||||||||| | Sbjct 47009911 GCGGTGTTGATGATGTCAAAGCCGATGCTCCCGCCAAAGGTGCTGGGCTTCCAGTACTCT 47009970 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 || ||||| ||| ||| |||| || ||||||| ||| | || || |||| ||| | Sbjct 47009971 GGTGAGCAAATGGGGTTTCCCATCAGGCCTTTCAGAGAATAGGGGGCACCCATCTCCACC 47010030 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||| |||| || ||||||||| || | || || || || | | || | |||||| Sbjct 47010031 ATGGTCTCCCCAAAGATGGCATTGGTTCTGGGCTTCTCCACCAGCAGACCTGGGTAGAGC 47010090 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| || || | ||||| | | |||| ||| ||||| |||||||| || ||| Sbjct 47010091 TCCACAGCATCCACATGCCCATACATCTCCTCCAGCTCTGCAGCCATCTCCTTTTCTCCT 47010150 Score = 100 bits (110), Expect = 4e-16 Identities = 153/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 9754 TCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTC 9813 || ||| |||| |||||||| | | || || ||||| ||||| | ||||||||| ||| Sbjct 47012348 TCATCATCCCAGTCCGGGTGGACCTCCTTCAGGACATCACAGACGCGGTTGTGTTCCCTC 47012407 Query 9814 AGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACT 9873 ||||| || || ||||||||||| | ||| ||||| | || ||| | |||| ||||| Sbjct 47012408 AGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCGAACGCCTCATGGCCCACA 47012467 Query 9874 GCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATAT--GCACCTGGGTCTCTT 9931 || ||||| || || || || | ||| | || |||||| || ||| ||||| Sbjct 47012468 GCGAAGCGGTGAGACTCAGGGACATGGGGAGGGTAGTGCATATCAGCCCCT--ACCTCTT 47012525 Query 9932 TGACGGTGGGGGGATACATTTCACCGTCAATAACCT 9967 | || || || || |||| || || || | |||| Sbjct 47012526 TCACCGTAGGTGGGTACACCTCTCCATCCAGCACCT 47012561 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 10179 AAAAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGA 10238 || || ||||| || |||||||| |||||||||| ||||||||| ||| |||||||| Sbjct 47013048 AAGAACTGGTGGGTGAAGTGTTGGGCGAAAAAAGCAAACATCAGGCTGGAACCCTGGGGG 47013107 Query 10239 TCGGGGATAAAGGTCCTCC 10257 ||||||||||| |||||| Sbjct 47013108 TCGGGGATAAATTTCCTCC 47013126 >seq14 Length=93901823 Score = 129 bits (142), Expect = 8e-25 Identities = 132/169 (78%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| ||| | |||||| |||| ||||||||||||||||| || || ||||||||| Sbjct 14383241 TCAGGCATCAGCGGGTGCCAGTGGTACAGGGTATTGAACTCGGCTGCAATACGGTTCTGG 14383182 Query 9613 TACT-GAAAGGC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 |||| |||| || ||| ||| || | ||||||||| || | |||||||||||||| | Sbjct 14383181 TACTGGAAACGCTGGT--TGAAGAGGAGCTCCGGGTCGAACTTGAGCTGGAAGTGGTAGC 14383124 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | || || |||||||| || | ||| | ||| |||||||| || || Sbjct 14383123 CACTCAGGTGCTGGACGTAGTCCTCGATCACAATCTTAATGGTCTCGCC 14383075 Score = 127 bits (140), Expect = 3e-24 Identities = 204/293 (70%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785 ||| || || ||||| || || | | ||||| ||||||| || || || || | || Sbjct 14382791 GATGAGGCGTGTGGTCTGGAAGATGCGTTCGTCGTCCCATTCGGGATGCTCCTGCCTCAG 14382732 Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845 || || ||||| | |||||| || | |||||| ||||||||||||||||| | || || Sbjct 14382731 GACGTCACAGACACGGTTGTGCTCGCGCAGCCAGATGGTGGCGTACATCATGAGGCCGGG 14382672 Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGC 9905 || | ||||| || | ||||| || ||||| | || |||| ||||| ||| | Sbjct 14382671 GACCAGGCCAAAATGCTCGTGGCCCACAGCGAAGCGGTGCTCCTCGGCCACTTGGGGTGG 14382612 Query 9906 ATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAAC 9965 || |||| | || ||| | || ||||| || | || || | | ||| Sbjct 14382611 GTAGTGCATCTCGACTCCAACCTCCCTTACCAATGGGGGGTAGACCTCGCCATTCAAAAC 14382552 Query 9966 CTGATACTTCATCTTCCCATCCTTGAACAGACGCAGCTTATGCTGCTTCTCCA 10018 ||||||||||| || |||||||||||||| | |||||| ||||| |||||| Sbjct 14382551 CTGATACTTCAGTTTGCCATCCTTGAACAGCCTCAGCTTGTGCTGTCTCTCCA 14382499 >seq23 Length=49854004 Score = 107 bits (118), Expect = 3e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 9754 TCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTC 9813 || ||| |||| ||||||||| | | || || ||||| ||||| | ||||||||||||| Sbjct 4746966 TCATCATCCCAGTCCGGGTGTACCTCCTTCAGGACATCACAGACTCGGTTGTGTTCTCTC 4746907 Query 9814 AGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACT 9873 ||||| ||||| || |||||||| | ||| ||||| | || || | |||| ||||| Sbjct 4746906 AGCCAGATGGTAGCATACATCATAAGACCAGGCACCAGGCCGAATGCCTCATGGCCCACA 4746847 Query 9874 GCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTTG 9933 || ||||| || || || || | ||| | || |||||| |||| ||| || Sbjct 4746846 GCGAAGCGGTGAGACTCAGGGACATGGGGAGGGTAGTGCATATCCACCCCTACCTCCTTC 4746787 Query 9934 ACGGTGGGGGGATACATTTCACCGTCAATAACCT 9967 || || || || |||| || || || | |||| Sbjct 4746786 ACTGTAGGTGGGTACACCTCTCCCTCCAACACCT 4746753 Score = 107 bits (118), Expect = 3e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 8947 GATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGAT 9006 ||||| || || | | ||| || ||||||||||| ||||||||| | || || || || Sbjct 4750771 GATGTTAAAGCCGATGCTCCCACCAAAGGTGCTGGGCTTCCAGTACTCTGGCGAACAAAT 4750712 Query 9007 GACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACC 9066 | || |||| || ||||||| ||| | || || |||| ||| | ||| |||| || Sbjct 4750711 GGGATTTCCCATCAGGCCTTTCAGGGAGTAGGGGGCGCCCATCTCCACCATGGTCTCCCC 4750652 Query 9067 GAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTC 9126 ||||||||| || | || || || || | | ||| | |||||| || ||||| || Sbjct 4750651 AAAGATGGCATTGGTTCTTGGCTTCTCCACCAGCAGGCCTGGGTAGAGCTCCACAGCATC 4750592 Query 9127 GACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | ||||| | | |||| ||| ||||| |||||| | || ||| Sbjct 4750591 CACATGTCCATACATCTCCTCCAGCTCAGCAGCCATCTCCGTATCCCCT 4750543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 721627786577000