Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq15 123 3e-23 seq6 109 7e-19 seq4 100 3e-16 seq13 84.2 3e-11 seq14 82.4 9e-11 >seq15 Length=103963436 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| ||||| |||||| ||| || |||||||| |||| ||||| Sbjct 25930909 CCTCGTCTCTGCTGATGAGCTCATTTGAGAAGGTCAGGCCAGGCATGAGCCCCCTCTTCT 25930850 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| ||||||||| ||| ||| || |||||||||||||||||||| ||| ||| || | Sbjct 25930849 TCAGCCAGAAAATGGCAGCAAAGGACCCAGAGAAGAAGATCCCCTCAACAGCCGCAAATG 25930790 Query 127659 CAAATAGACGCTC 127671 ||| | |||||| Sbjct 25930789 CAACCACACGCTC 25930777 >seq6 Length=87043187 Score = 109 bits (120), Expect = 7e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||||| || ||||||||||| |||| ||||| Sbjct 51008541 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTTAGGCCTGGCATGAGCCCCCTCTTCT 51008482 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 | | ||||||||| ||| ||| |||||||| |||||||||||||| ||| || || | Sbjct 51008481 TTAGCCAGAAAATGGCAGCAAAGGAGCCAGAAAAGAAGATCCCCTCAACAGCTGCAAAGG 51008422 Query 127659 CAAATAGACGCTC 127671 ||| | |||||| Sbjct 51008421 CAACCACACGCTC 51008409 >seq4 Length=82398023 Score = 100 bits (110), Expect = 3e-16 Identities = 118/158 (75%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTG 116517 |||||| | | |||||||||| |||||| ||||| | || || ||| |||||||| Sbjct 48906065 CTCATCATGGCCGGTGTACTCTACAATTTCGGTACAAAGGTTACTGGACT--TAATGGTG 48906122 Query 116518 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTC 116577 |||| ||||| ||||| ||| |||| || || |||||||| | |||||| || || Sbjct 48906123 CCCAGGTTCTGCTGATTGCTCTTCCTGTTGCATGCGTCCTTGTAAATCATATAGGGGGTA 48906182 Query 116578 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATAC 116615 |||||||| || ||||||| | ||| || | ||| || Sbjct 48906183 CCCGTCTCAGTCTGGGACTCAATAATGGCATGCCACAC 48906220 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/145 (76%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 116473 GTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTT 116530 |||||||||| |||||| ||||| | || || ||| |||||||||||| ||||| | Sbjct 46250992 GTGTACTCTACAATTTCAGTACAAAGGTTACTGGACT--TAATGGTGCCCAGGTTCTGCT 46250935 Query 116531 GATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTT 116590 |||| ||| |||| || || |||||||| |||||||| || || ||||| || || | Sbjct 46250934 GATTGCTCTTCCTGTTGCATGCGTCCTTGTAAAGCATATAGGGGGTACCCGTTTCAGTCT 46250875 Query 116591 GGGACTTGAGAATAGCCTTCCATAC 116615 |||||| | ||| || | ||| || Sbjct 46250874 GGGACTCAATAATGGCATGCCACAC 46250850 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| ||||| | |||| ||||| |||| ||| |||||||| ||| Sbjct 46252547 TAGATGTTGCTGGTGTAGGGCTCGATAGACTCGTTGTTGCCCAGGATCTGGGCTGTAGAG 46252488 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 || ||||||||||| |||| || || ||||| Sbjct 46252487 GCCGTGGGCATGGGGGCCAGCAGCAGACTGTT 46252456 >seq13 Length=107758822 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 |||||||| | ||||| ||||| | | |||| ||||| |||| ||| || ||||||||| Sbjct 78349596 TAGATGTTACTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGAGCTGTGGAG 78349655 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACC 116003 || ||||||||||| |||| || | ||||| | || ||| Sbjct 78349656 GCCGTGGGCATGGGGGCCAGCAGCAAACTGTTCCTGACACC 78349696 >seq14 Length=93901823 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || ||| || || || ||||| || || | ||||| Sbjct 93502008 CCTCGTCTCTGCTGATGAGCTCGTTGGAGTAGGTGAGCCCAGGCATCAGGCCTCTCTTCT 93501949 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||||||| |||| || ||| || || ||||||||||| |||||||| ||||||| Sbjct 93501948 TCAACCAATAAATAGCTGCAAACGACCCCGAGAAGAAGATGCCCTCCACTGCAGCGAACG 93501889 Query 127659 CAAATAGACGCTC 127671 | | || ||||| Sbjct 93501888 CCACTATCCGCTC 93501876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611726840449800