Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq13 111 2e-19 seq4 105 1e-17 seq6 84.2 3e-11 >seq13 Length=107758822 Score = 111 bits (122), Expect = 2e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| ||||| | ||||||| | || |||| |||||| || || |||| Sbjct 78348997 CCTGCTTCCAGCCGTAGAAGTGCATGCTGGTGAGCTTGCCGTAGTTGGGCTCAGCGATGT 78349056 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAA 204029 | ||||| ||||||||||| ||||| ||||| | | | || || || ||||| || | || Sbjct 78349057 GGATGTTGAGAGACTGGCTCTGGTCTATGAAGGCCCCGCGGTCAGCAGCCATCTTCAGAA 78349116 Query 204030 TGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 | |||||||| || ||||||||||| ||||| Sbjct 78349117 TAGTCTTCTGGGAGATCTCCCACACAGTCTT 78349147 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 ||| ||| || ||||| || || || | |||||| | | ||| ||||| | || |||| Sbjct 78349561 TGACCTGGAACTCTCCAGAGAGGACTCTGCGGGTGTAGATGTTACTGGTGTAGGGCTCGA 78349620 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | |||||||||||| | |||||||| ||| ||||||||||||||| ||||| |||| Sbjct 78349621 TGGACTCGTTGTTGCCCAGGATCTGAGCTGTGGAGGCCGTGGGCATGGGGGCCAGCAGCA 78349680 >seq4 Length=82398023 Score = 105 bits (116), Expect = 1e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| ||||| | ||||||| || || || | |||||| || || |||| Sbjct 46253175 CCTGCTTCCAGCCGTAGAAGTGCATGCTAGTGAGCTTTCCGTAGTTGGGCTCAGCGATGT 46253116 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAA 204029 | ||||| ||||||||||| ||||| ||||| | | | || || || ||||| || | || Sbjct 46253115 GGATGTTGAGAGACTGGCTCTGGTCTATGAAGGCCCCGCGGTCAGCAGCCATCTTCAGAA 46253056 Query 204030 TGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 | ||||| || || ||||||||||| ||||| Sbjct 46253055 TAGTCTTTTGGGAGATCTCCCACACAGTCTT 46253025 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 ||| ||| || ||||| || || || | |||||| | | |||| ||||| | || |||| Sbjct 46252582 TGACCTGGAACTCTCCAGAGAGGACTCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGA 46252523 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | |||||||||||| | ||||| || || ||||||||||||||| ||||| |||| Sbjct 46252522 TAGACTCGTTGTTGCCCAGGATCTGGGCTGTAGAGGCCGTGGGCATGGGGGCCAGCAGCA 46252463 Query 204312 GGGAGTTGCGCACACCGT 204329 | ||| | |||||||| Sbjct 46252462 GACTGTTCCTCACACCGT 46252445 >seq6 Length=87043187 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 ||||||| | ||||| ||||||||| | | | ||||| ||||||| ||| | | | Sbjct 51008541 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTTAGGCCTGGCATGAGCCCCCTCTTCT 51008482 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACG 160064 | ||||| |||||||| ||||| | || ||| ||||||||||| || || ||||| | Sbjct 51008481 TTAGCCAGAAAATGGCAGCAAAGGAGCCAGAAAAGAAGATCCCCTCAACAGCTGCAAAGG 51008422 Query 160065 CCACGAGCCTCTCACC 160080 | || | | |||||| Sbjct 51008421 CAACCACACGCTCACC 51008406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 792847709306800