Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3 131 1e-24 seq6 113 3e-19 seq3797 109 4e-18 seq67696 100 2e-15 seq13 100 2e-15 seq31940 98.7 7e-15 >seq3 Length=92503428 Score = 131 bits (144), Expect = 1e-24 Identities = 670/1052 (64%), Gaps = 20/1052 (2%) Strand=Plus/Plus Query 517265 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 517324 || || |||||||||||||| || | ||||| || || || || |||||||| |||| Sbjct 60024656 ACGTTCAGAATACCATTGGCGTCGATGTCAAAGGTCACCTCGATCTGAGGGACTCCTCGT 60024715 Query 517325 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 517384 | | ||| |||||||| | | ||| | ||||| || || || || || | Sbjct 60024716 GGGGAAGGGGGGATCCCAGAGAGCTCAAACTTCCCCAGGAGGTTGTTGTCCTTGGTCATG 60024775 Query 517385 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 517444 || || |||||| | | ||||| | || | | || || || || ||||| ||| Sbjct 60024776 GCTCTCTCTCCCTCGTAGACCTGGATCATGACCCCGGGCTGGTTGTCGGAGTAAGTGGTA 60024835 Query 517445 AATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 517503 || ||||| | | ||| | || || || ||||| | | || | |||||| | Sbjct 60024836 AAGG-TCTGGGTCTGTTTGGATGGGATGGTGGTGTTGCGTTTGATCAGGGCGGTCATGAC 60024894 Query 517504 ACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTG 517563 ||| || || ||||| | || || || || |||| ||||| | || | | | || Sbjct 60024895 ACCTCCAGCGGTTTCGATGCCCAGGGACAGGGGAGCCACATCCAGCAGCAGCAGGTCCTG 60024954 Query 517564 AAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAA 517622 | || ||| | | ||| | |||| | || || || || ||||| || || || | Sbjct 60024955 GACGTTCTCAGACTTGTCGCCAGATAAGA-TGGCCGCCTGGATGGCAGCGCCGTAGGCCA 60025013 Query 517623 CAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAA 517682 | || || || || || | | | ||||| | | || |||||||| | || | Sbjct 60025014 CCGCCTCGTCTGGGTTGATGCTCTTGTTTAGCTCTCGGCCGTTGAAAAAGTCCTGCAGGA 60025073 Query 517683 GTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 517741 | | ||| ||||| || || || | || ||||| || | || | || || | || Sbjct 60025074 GCT-TCTGGACCTTGGGGATCCGGGTGGAGCCTCCGACCAGGACGACATCGTGGATTTGG 60025132 Query 517742 GATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAAC 517801 | || |||| || | |||| | |||| || || || || || | || || Sbjct 60025133 GCCTTGTCCATCTTGGCATCCCTGAGGGCTTTCTCCACAGGCTCCAGTGTTCCCCTGAAG 60025192 Query 517802 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTC 517859 | ||| ||||| | || || || ||| || || || || | || || || || | Sbjct 60025193 AGGTCAGAACACATCTCCTCAAAACGAGCCCTGGT--GATGGAGGTGTAGAAGTCGATGC 60025250 Query 517860 CTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAG 517919 | || || | || |||| ||||| | | || | || || || | | || | Sbjct 60025251 CCTCAAAGAGGGAGTCAATCTCAATGCTGGCCTGGGAGCTGGAGGACAGCGTTCTCTTGG 60025310 Query 517920 CACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGATTCAAATCT 517975 | | || || |||||||| ||||| | | || |||| | ||| |||| || Sbjct 60025311 CCCTCTCGCAGGCTGTCCTCAGTCTCCTCAGAGCCCGCTTGTTCTGGCTGATG----TCC 60025366 Query 517976 GTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCT 518035 | || | ||| |||||||| || || ||| | | || || || || ||||| || Sbjct 60025367 TTCTTGTGTTTCCTCTTGAACTCCTCCACAAAGTGACTGACCAGGCGGTTGTCAAAGTCC 60025426 Query 518036 TCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGA 518095 || || |||| | ||| | ||| | ||| || | || | || | ||||| || | Sbjct 60025427 TCCCCGCCCAGGTGAGTGTCTCCAGCCGTGGCCTTCACCTCAAAGATCCCATCCTCGATG 60025486 Query 518096 GACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT-CATTTC 518154 | || | | || ||| ||| || ||||||| |||||||| || || || | || | Sbjct 60025487 GTCAGGATGGACACGTCAAAGGTGCCCCCACCCAGGTCAAAAATCAGGACGTTGCGTTCC 60025546 Query 518155 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214 || | |||| ||| || | ||| || |||| || ||||| || || || || || || Sbjct 60025547 TTGGACTTGCCTTTG-TCCATACCGTAAGCAATGGCTGCAGCCGTGGGCTCGTTGATGAT 60025605 Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274 |||| ||||| || ||||| || ||| || || |||||||| ||||| |||||||| Sbjct 60025606 CCTCAGCACATTCAGCCCAGCGATCACTCCAGCGTCCTTAGTGGCCTGTCTCTGTGAATC 60025665 Query 518275 GTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 ||| || || ||||| || || || || |||| Sbjct 60025666 GTTGAAGTAGGCAGGGACTGTGATGACTGCAT 60025697 >seq6 Length=87043187 Score = 113 bits (124), Expect = 3e-19 Identities = 221/324 (68%), Gaps = 2/324 (1%) Strand=Plus/Minus Query 517984 TTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 518043 ||| |||||||| || || ||| | | || || || || ||||| || || || || Sbjct 38096870 TTTCCTCTTGAACTCCTCCACAAAGTGACTAACCAGGCGGTTGTCAAAGTCCTCCCCGCC 38096811 Query 518044 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 518103 || | ||| | ||| | ||| || | || | || | |||||||| | | || | Sbjct 38096810 CAGGTGAGTGTCTCCAGCCGTGGCCTTCACCTCAAAGATCCCATCTTCGATGGTCAGGAT 38096751 Query 518104 AGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT-CATTTCTTTGTCTT 518162 | || ||| ||| || ||||||| |||||||| || || || | || | | | | | Sbjct 38096750 GGACACGTCAAAGGTGCCCCCACCCAGGTCAAAAATCAGGACGTTGCGTTCCCTGGACAT 38096691 Query 518163 GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 518222 | ||| || | || || || | || || ||||| || || || || ||||||| | Sbjct 38096690 GCCTTTGTCCATG-CCGTAGGCGATGGCTGCCGCAGTGGGCTCGTTGATGATTCTCAGCA 38096632 Query 518223 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 518282 |||| || ||||| || ||| || || |||||||| ||||| ||||||||||| || | Sbjct 38096631 CATTCAGCCCAGCGATCACTCCAGCGTCCTTAGTGGCCTGTCTCTGTGAATCGTTGAAGT 38096572 Query 518283 ATGCAGGAACAGTAATAACGGCAT 518306 | ||||| || || || || |||| Sbjct 38096571 AGGCAGGGACTGTGATGACTGCAT 38096548 Score = 109 bits (120), Expect = 4e-18 Identities = 220/324 (68%), Gaps = 2/324 (1%) Strand=Plus/Minus Query 517984 TTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 518043 ||| |||||||| || || ||| | | || || || || ||||| || || || || Sbjct 38103402 TTTCCTCTTGAACTCCTCCACAAAGTGACTAACCAGGCGGTTGTCAAAGTCCTCCCCGCC 38103343 Query 518044 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 518103 || | ||| | ||| | ||| || | || | || | ||||| || | | || | Sbjct 38103342 CAGGTGAGTGTCTCCAGCCGTGGCCTTCACCTCAAAGATCCCATCCTCGATGGTCAGGAT 38103283 Query 518104 AGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT-CATTTCTTTGTCTT 518162 | || ||| ||| || ||||||| |||||||| || || || | || | | | | | Sbjct 38103282 GGACACGTCAAAGGTGCCCCCACCCAGGTCAAAAATCAGGACGTTGCGTTCCCTGGACAT 38103223 Query 518163 GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 518222 | ||| || | || || || | || || ||||| || || || || ||||||| | Sbjct 38103222 GCCTTTGTCCATG-CCGTAGGCGATGGCTGCCGCAGTGGGCTCGTTGATGATTCTCAGCA 38103164 Query 518223 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 518282 |||| || ||||| || ||| || || |||||||| ||||| ||||||||||| || | Sbjct 38103163 CATTCAGCCCAGCGATCACTCCAGCGTCCTTAGTGGCCTGTCTCTGTGAATCGTTGAAGT 38103104 Query 518283 ATGCAGGAACAGTAATAACGGCAT 518306 | ||||| || || || || |||| Sbjct 38103103 AGGCAGGGACTGTGATGACTGCAT 38103080 Score = 87.8 bits (96), Expect = 1e-11 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 518189 GCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCA 518248 || || ||||| || || || || ||||||| ||||| || ||||| || ||| || Sbjct 38086206 GCTGCCGCAGTGGGCTCGTTGATGATTCTCAGCACATTCAGCCCAGCGATCACTCCAGCG 38086147 Query 518249 TCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || |||||||| ||||| ||||||||||| || || ||||| || || || || |||| Sbjct 38086146 TCCTTAGTGGCCTGTCTCTGTGAATCGTTGAAGTAGGCAGGGACTGTGATGACTGCAT 38086089 >seq3797 Length=7621 Score = 109 bits (120), Expect = 4e-18 Identities = 220/324 (68%), Gaps = 2/324 (1%) Strand=Plus/Minus Query 517984 TTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 518043 ||| |||||||| || || ||| | | || || || || ||||| || || || || Sbjct 4165 TTTCCTCTTGAACTCCTCCACAAAGTGACTAACCAGGCGGTTGTCAAAGTCCTCCCCGCC 4106 Query 518044 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 518103 || | ||| | ||| | ||| || | || | || | ||||| || | | || | Sbjct 4105 CAGGTGAGTGTCTCCAGCCGTGGCCTTCACCTCAAAGATCCCATCCTCGATGGTCAGGAT 4046 Query 518104 AGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT-CATTTCTTTGTCTT 518162 | || ||| ||| || ||||||| |||||||| || || || | || | | | | | Sbjct 4045 GGACACGTCAAAGGTGCCCCCACCCAGGTCAAAAATCAGGACGTTGCGTTCCCTGGACAT 3986 Query 518163 GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 518222 | ||| || | || || || | || || ||||| || || || || ||||||| | Sbjct 3985 GCCTTTGTCCATG-CCGTAGGCGATGGCTGCCGCAGTGGGCTCGTTGATGATTCTCAGCA 3927 Query 518223 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 518282 |||| || ||||| || ||| || || |||||||| ||||| ||||||||||| || | Sbjct 3926 CATTCAGCCCAGCGATCACTCCAGCGTCCTTAGTGGCCTGTCTCTGTGAATCGTTGAAGT 3867 Query 518283 ATGCAGGAACAGTAATAACGGCAT 518306 | ||||| || || || || |||| Sbjct 3866 AGGCAGGGACTGTGATGACTGCAT 3843 >seq67696 Length=1646 Score = 100 bits (110), Expect = 2e-15 Identities = 196/287 (68%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 || || ||||| || || || |||| | ||| | ||| | ||| || | || | || Sbjct 1091 CGGTTGTCAAAGTCCTCCCCGCCCAGGTGAGTGTCTCCAGCCGTGGCCTTCACCTCAAAG 1150 Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 | ||||| || | | || | | || ||| ||| || ||||||| |||||||| Sbjct 1151 ATCCCATCCTCGATGGTCAGGATGGACACGTCAAAGGTGCCCCCACCCAGGTCAAAAATC 1210 Query 518141 AGTACATT-CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 518199 || || || | || | | | | || ||| || | || || || | || || ||||| Sbjct 1211 AGGACGTTGCGTTCCCTGGACATGCCTTTGTCCATG-CCGTAGGCGATGGCTGCCGCAGT 1269 Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 || || || || ||||||| ||||| || ||||| || ||| || || |||||||| Sbjct 1270 GGGCTCGTTGATGATTCTCAGCACATTCAGCCCAGCGATCACTCCAGCGTCCTTAGTGGC 1329 Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 ||||| ||||||||||| || || ||||| || || || || |||| Sbjct 1330 CTGTCTCTGTGAATCGTTGAAGTAGGCAGGGACTGTGATGACTGCAT 1376 >seq13 Length=107758822 Score = 100 bits (110), Expect = 2e-15 Identities = 104/135 (77%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 518172 CAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGAC 518231 |||| ||||| |||| ||| ||||||||||| ||||| || |||| |||||| || |||| Sbjct 62877678 CAAG-CCATAAGCAATAGCGGCAGCAGTTGGCTCATTGATGATTCGCAAAACGTTCAGAC 62877736 Query 518232 CAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAA 518291 ||| ||| |||| |||||||| || ||||| | || || || || || || || || | Sbjct 62877737 CAGAGATTGTTCCAGCATCTTTGGTTGCTTGGCGCTGAGAGTCATTGAAGTAAGCTGGCA 62877796 Query 518292 CAGTAATAACGGCAT 518306 | || | ||| |||| Sbjct 62877797 CTGTTACAACAGCAT 62877811 >seq31940 Length=4218 Score = 98.7 bits (108), Expect = 7e-15 Identities = 199/293 (68%), Gaps = 2/293 (1%) Strand=Plus/Minus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 || || || || ||||| || || || |||| | ||| | ||| | ||| || | || Sbjct 4133 ACCAGGCGGTTGTCAAAGTCCTCCCCGCCCAGGTGAGTGTCTCCAGCCGTGGCCTTCACC 4074 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | || | ||||| || | | || | | || ||| ||| || ||||||| ||| Sbjct 4073 TCAAAGATCCCATCCTCGATGGTCAGGATGGACACGTCAAAGGTGCCCCCACCCAGGTCA 4014 Query 518135 AAAATAAGTACATT-CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGC 518193 ||||| || || || | || | | | | || ||| || | || || || | || || Sbjct 4013 AAAATCAGGACGTTGCGTTCCCTGGACATGCCTTTGTCCATG-CCGTAGGCGATGGCTGC 3955 Query 518194 AGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTT 518253 ||||| || || || || ||||||| ||||| || |||| || ||| || || || Sbjct 3954 CGCAGTGGGCTCGTTGATGATTCTCAGCACATTCAGCCCAGAGATCACTCCAGCGTCCTT 3895 Query 518254 AGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 |||||| ||||| ||||||||||| || || ||||| || || || || |||| Sbjct 3894 AGTGGCCTGTCTCTGTGAATCGTTGAAGTAGGCAGGGACTGTGATGACTGCAT 3842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3769302104181430