Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq15 96.9 4e-15 seq6 96.9 4e-15 seq14 87.8 2e-12 >seq15 Length=103963436 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 102179 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-G 102237 |||||| | | ||||||||| ||||||||| |||||||||||||| ||||| ||| | Sbjct 25930776 TGAGCGTGTGGTTGCATTTGCGGCTGTTGAGGGGATCTTCTTCTCTGGGTCCTT-TGCTG 25930834 Query 102238 CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTA 102297 | |||| ||||| |||||| | || |||||||| || || |||||| || ||||| | Sbjct 25930835 CCATTTTCTGGCTGAAGAAGAGGGGGCTCATGCCTGGCCTGACCTTCTCAAATGAGCTCA 25930894 Query 102298 TCTCTCGTGACGAGG 102312 || | ||||||| Sbjct 25930895 TCAGCAGAGACGAGG 25930909 >seq6 Length=87043187 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 102179 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-G 102237 |||||| | | || ||||| ||||||||| |||||||| ||||| ||||| ||| | Sbjct 51008408 TGAGCGTGTGGTTGCCTTTGCAGCTGTTGAGGGGATCTTCTTTTCTGGCTCCTT-TGCTG 51008466 Query 102238 CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTA 102297 | |||| ||||| |||||| | || ||||||||||| || ||||||||||||||| | Sbjct 51008467 CCATTTTCTGGCTAAAGAAGAGGGGGCTCATGCCAGGCCTAACCTTCTCCAACGAGCTCA 51008526 Query 102298 TCTCTCGTGACGAGG 102312 || | ||||||| Sbjct 51008527 TCAGCAGAGACGAGG 51008541 >seq14 Length=93901823 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGG 102262 || ||||| ||||||||||| || || || ||| |||||||||||| | |||||| |||| Sbjct 93501900 GTGGAGGGCATCTTCTTCTCGGGGTCGTT-TGCAGCTATTTATTGGTTGAAGAAGAGAGG 93501958 Query 102263 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 102312 || ||||| || ||| || |||||||||||| ||| | ||||||| Sbjct 93501959 CCTGATGCCTGGGCTCACCTACTCCAACGAGCTCATCAGCAGAGACGAGG 93502008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618941044351600