Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq13 107 2e-18 seq15 100 3e-16 seq14 84.2 3e-11 seq6 82.4 9e-11 >seq13 Length=107758822 Score = 107 bits (118), Expect = 2e-18 Identities = 112/146 (77%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACT---CTTAATCGTCCCCAAATTCTTT 106561 |||||||||| ||| || ||||| | ||| ||| ||| || || |||| |||| Sbjct 78356151 GTGTACTCTACAATCTCGGTACAGAGGTT---ACTGGACTTGATGGTTCCCAGGTTCTGA 78356207 Query 106562 TGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTC 106621 |||||||| || ||||||| || |||||||||||||||||||| || |||||||| ||| Sbjct 78356208 TGGTTACTTTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGGGTGCCCGTCTCAGTC 78356267 Query 106622 TGTGACTTGAGAATTGCCTTCCACAC 106647 || |||| | || || | |||||| Sbjct 78356268 TGGGACTCAATGATGGCGTGCCACAC 78356293 >seq15 Length=103963436 Score = 100 bits (110), Expect = 3e-16 Identities = 98/124 (79%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 |||| |||| | || || |||||||||||| ||||| |||||||| |||| ||||| Sbjct 25930909 CCTCGTCTCTGCTGATGAGCTCATTTGAGAAGGTCAGGCCAGGCATGAGCCCCCTCTTCT 25930850 Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 ||| ||| |||| || ||| || ||||| ||||||||||| ||||| ||| |||||| Sbjct 25930849 TCAGCCAGAAAATGGCAGCA-AAGGACCCAGAGAAGAAGATCCCCTCAACAGCCGCAAAT 25930791 Query 117412 GCAA 117415 |||| Sbjct 25930790 GCAA 25930787 >seq14 Length=93901823 Score = 84.2 bits (92), Expect = 3e-11 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 |||| |||| | || || || || ||| || || || ||||| || || | ||||| Sbjct 93502008 CCTCGTCTCTGCTGATGAGCTCGTTGGAGTAGGTGAGCCCAGGCATCAGGCCTCTCTTCT 93501949 Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCAC 117401 |||||||||||||||| ||| || ||||| ||||||||||| |||||||| Sbjct 93501948 TCAACCAATAAATAGCTGCA-AACGACCCCGAGAAGAAGATGCCCTCCAC 93501900 >seq6 Length=87043187 Score = 82.4 bits (90), Expect = 9e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 |||| |||| | || || || || |||||| ||||||||||||||| |||| ||||| Sbjct 51008541 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTTAGGCCTGGCATGAGCCCCCTCTTCT 51008482 Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 | | ||| |||| || ||| || || || || |||||||| ||||| ||| ||||| Sbjct 51008481 TTAGCCAGAAAATGGCAGCA-AAGGAGCCAGAAAAGAAGATCCCCTCAACAGCTGCAAAG 51008423 Query 117412 GCAA 117415 |||| Sbjct 51008422 GCAA 51008419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588268712592200