Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq13 96.9 3e-14 seq20 89.7 4e-12 seq4 89.7 4e-12 >seq13 Length=107758822 Score = 96.9 bits (106), Expect = 3e-14 Identities = 103/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || |||| || ||||| || || |||||||| || || ||||| || ||||||| Sbjct 62877811 ATGCTGTTGTAACAGTGCCAGCTTACTTCAATGACTCTCAGCGCCAAGCAACCAAAGATG 62877752 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| || |||| || || ||| | || || |||||||| || |||||||| || Sbjct 62877751 CTGGAACAATCTCTGGTCTGAACGTTTTGCGAATCATCAATGAGCCAACTGCTGCCGCTA 62877692 Query 550518 TTGCATATGGACTTG 550532 |||| ||||| |||| Sbjct 62877691 TTGCTTATGG-CTTG 62877678 Score = 87.8 bits (96), Expect = 1e-11 Identities = 101/135 (75%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| | || ||||| || || || || ||||| || || || || || ||||||| Sbjct 62941470 ATGCAGTTGTTACCGTACCTGCCTACTTCAACGACTCCCAGCGCCAGGCAACCAAAGATG 62941529 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || | || || ||||| || ||||| |||||||| || ||||||||||| Sbjct 62941530 CTGGTACCATCTCGGGGCTGAATGTGCTGCGTATCATCAATGAGCCAACTGCTGCTGCCA 62941589 Query 550518 TTGCATATGGACTTG 550532 |||| || || |||| Sbjct 62941590 TTGCCTACGG-CTTG 62941603 >seq20 Length=86795997 Score = 89.7 bits (98), Expect = 4e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| | ||||| ||||| || || || ||||| || || || || || ||||||| Sbjct 60604577 ATGCAGTGGTCACTGTGCCAGCTTACTTCAACGACTCTCAGCGCCAGGCCACCAAAGATG 60604518 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||| | ||||| || || || || || |||||||| || ||||||||||| Sbjct 60604517 CAGGGACTATCTCAGGACTCAACGTACTCCGCATCATCAATGAGCCAACTGCTGCTGCTA 60604458 Query 550518 TTGCATATGGACTTGATAA 550536 | || ||||| || || || Sbjct 60604457 TCGCCTATGGCCTGGACAA 60604439 >seq4 Length=82398023 Score = 89.7 bits (98), Expect = 4e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| | ||||| ||||| || || |||||||| || || || || | ||||||| Sbjct 60822850 ATGCAGTTGTTACTGTGCCAGCTTACTTCAATGACTCCCAGCGCCAGGCATCCAAAGATG 60822791 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || | || || ||||| || | ||| |||||||| || ||||||||||| Sbjct 60822790 CTGGGACCATCTCAGGCCTGAATGTACTGCATATCATCAATGAGCCAACTGCTGCTGCCT 60822731 Query 550518 TTGCATATGGACTTGATAA 550536 |||| || || | ||||| Sbjct 60822730 TTGCCTACGGCTTGGATAA 60822712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4017018596580950