Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq29 134 1e-26 seq19 131 1e-25 >seq29 Length=42488238 Score = 134 bits (148), Expect = 1e-26 Identities = 134/174 (77%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| |||||||| | ||||||||||||||| ||||| Sbjct 12016575 AGTCCTGTGATGTGGGCGATCATGTAGGTGAGGAGGGCGTAGCTGGCGATGTTGAAGGGC 12016516 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || | |||||||||||||| | |||||| ||||| ||||| | ||| || || | Sbjct 12016515 ACTCCCAAGCCCATGTCCCCCGAGCGCTGGTACAGCTGGCACGACAACTCCCCATCAATG 12016456 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30042 || || ||||| |||| || ||||| || || || ||||| || || |||| Sbjct 12016455 ACATAGAACTGGCACAGGGCATGGCAGGGGGGCAGCACCATGTGGGGCAGGTCT 12016402 Score = 127 bits (140), Expect = 2e-24 Identities = 131/169 (78%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 |||||| |||| ||||| || | |||||||||||||| || ||||| ||||||| ||| Sbjct 12016047 CATGTCGCTGTATTCTGCACCATAGTGCCTCCACTGGAAACCATACACGGGTCCCAAGTC 12015988 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCC-TCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 |||||| |||| || || || |||| | ||||||| || | ||| || || || |||| Sbjct 12015987 TCCCTCCTCCCGGT-CTGTAAACCCCATTTTGTCCAGGAACTGTCTCGATCCATTTGCGT 12015929 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||||| | ||||| ||||| | |||||| || | ||||| || || Sbjct 12015928 CCCAGATCCTCACCCCTTTCTCTGTGAGCTCCTTAGCATTTGTTGAGCC 12015880 >seq19 Length=82978132 Score = 131 bits (144), Expect = 1e-25 Identities = 127/162 (78%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| ||||||| | ||||||||||||||| ||||| Sbjct 29462964 AGTCCTGTGATGTGGGCGATCATGTAGGTGAGGATGGCGTAGCTGGCGATGTTGAAGGGC 29462905 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || | |||||||||||||| | ||| || ||||| |||| |||| ||||| | Sbjct 29462904 ACTCCCTGGCCCATGTCCCCCGAGCACTGATACAGCTGGCACGGCAGCTTCCCGTCAATT 29462845 Query 29989 ACGTAAAACTGACACATGGTGTGGCA-CGGAGGAAGAGCCAT 30029 ||||| |||||||||| || ||||| || ||||| ||||| Sbjct 29462844 ACGTACAACTGACACAGGGCATGGCAGGGGGGGAAGCGCCAT 29462803 Score = 125 bits (138), Expect = 6e-24 Identities = 126/161 (78%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 30158 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30217 |||| || || || | |||||||||||||| | ||||| ||||||||||||||||| | Sbjct 29462515 TGTATTCCGCACCATAGTGCCTCCACTGGAAACTATACACTGGTCCCAGGTCTCCCTCAT 29462456 Query 30218 CCCTGTGCTC-GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 30276 ||| || ||| ||| ||| |||||||||| |||| | ||| |||| || ||||| || Sbjct 29462455 CCCGGT-CTCTGAACCCCATCTTGTCCAAGAAGTGTTGGGACCCGTATGCATCCCAAATA 29462397 Query 30277 TTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 || ||||| ||||| ||| |||| |||| ||||| || || Sbjct 29462396 TTCACCCCTTTCTCTGAGTGCTCCTTGGCATTTGTTGAGCC 29462356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407461461831815