Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq23 104 2e-17 >seq23 Length=49854004 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || | ||||||||| || ||||| || || || || || | Sbjct 40744192 CCTCCACGAAGACGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCTGAC 40744133 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | ||| || || || || |||| |||||| ||||| || ||| Sbjct 40744132 AAGGTGCGACCATCCTCAAGTTGTTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGA 40744073 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| ||||| || || || || ||| |||| | ||| || | || || Sbjct 40744072 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCGCTGGGCTCAACC 40744013 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| ||||| || || || || || || ||||||||||| Sbjct 40744012 TCAAGGGTGATTGTTTTCCCCGTCAACGTCTTCACGAATATCTGCAT 40743966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395157174229335