Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 3e-15 seq11 89.7 4e-13 seq1 86.0 5e-12 >seq4 Length=82398023 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| ||| | ||| || ||| |||||| || || ||||| || || Sbjct 51881064 GCCTCCCCTGAGACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGA 51881005 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| |||||| ||||| || ||||| ||||| || || | ||| Sbjct 51881004 GAGGGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 51880945 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| ||||| || ||| | | | || | |||||| Sbjct 51880944 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCAC 51880885 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || ||||| || || | || || || || |||||||| Sbjct 51880884 CTCAAGGGTTATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 51880837 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| ||| | ||| || ||| |||||| || || ||||| || || Sbjct 51881292 GCCTCCCCTGAGACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGA 51881233 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| |||||| ||||| || ||||| ||||| || || | ||| Sbjct 51881232 GAGGGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 51881173 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| ||||| || ||| | | | || | |||||| Sbjct 51881172 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCAC 51881113 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || ||||| || || | || || || || |||||||| Sbjct 51881112 CTCAAGGGTTATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 51881065 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| ||| | ||| || ||| |||||| || || ||||| || || Sbjct 51881520 GCCTCCCCTGAGACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGA 51881461 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| |||||| ||||| || ||||| ||||| || || | ||| Sbjct 51881460 GAGGGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 51881401 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| ||||| || ||| | | | || | |||||| Sbjct 51881400 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCAC 51881341 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || ||||| || || | || || || || |||||||| Sbjct 51881340 CTCAAGGGTTATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 51881293 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| ||| | ||| || ||| |||||| || || ||||| || || Sbjct 51881748 GCCTCCCCTGAGACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGA 51881689 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| |||||| ||||| || ||||| ||||| || || | ||| Sbjct 51881688 GAGGGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 51881629 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| ||||| || ||| | | | || | |||||| Sbjct 51881628 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCAC 51881569 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || ||||| || || | || || || || |||||||| Sbjct 51881568 CTCAAGGGTTATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 51881521 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| ||| | ||| || ||| |||||| || || ||||| || || Sbjct 51881976 GCCTCCCCTGAGACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGA 51881917 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| |||||| ||||| || ||||| ||||| || || | ||| Sbjct 51881916 GAGGGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 51881857 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| ||||| || ||| | | | || | |||||| Sbjct 51881856 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCAC 51881797 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || ||||| || || | || || || || |||||||| Sbjct 51881796 CTCAAGGGTTATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 51881749 Score = 95.1 bits (104), Expect = 9e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| ||| | ||| || ||| |||||| || || ||||| || || Sbjct 51880836 GCCTCCCCTGAGACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGA 51880777 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| |||||| ||||| || ||||| ||||| || || | ||| Sbjct 51880776 GAGGGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 51880717 Query 48659 AACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 51880716 GATGCCCTCCTTGTC 51880702 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || |||| ||| | ||| || ||| |||||| || || ||||| || || Sbjct 51882203 CCTCCCCTGAGACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 51882144 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| |||| |||||| ||||| || ||||| ||||| || || | ||| Sbjct 51882143 AGGGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 51882084 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || ||| | | | || | ||||||| Sbjct 51882083 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 51882024 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| || || | || || || || |||||||| Sbjct 51882023 TCAAGGGTTATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 51881977 >seq11 Length=93888508 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | ||| | ||| || ||| ||| ||||| || ||||| || || Sbjct 55250127 CCTCCCCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAG 55250186 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| | || |||| |||||| || || || ||||| ||||| || || | ||| Sbjct 55250187 AGCGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGG 55250246 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || ||| | | | || || ||| ||| Sbjct 55250247 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTCGGCTCAACC 55250306 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || |||| || || || || |||||||| Sbjct 55250307 TCCAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 55250353 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 48536 GTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATC 48595 || ||| || | || |||| |||| ||| || ||| ||| || || || ||||| || Sbjct 55249895 GTTGCCACCACGGAGACGCAGGACCAGATGAAGAGTGGACTCCTTCTGGATGTTGTAGTC 55249954 Query 48596 AGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGT 48655 || ||| | ||| | || |||| |||||| || || || ||||| ||||| || || | Sbjct 55249955 GGAGAGAGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCTGG 55250014 Query 48656 GGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTC 48715 ||| | |||||||||||| ||||| || ||| | | | || || ||| Sbjct 55250015 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTCGGCTC 55250074 Query 48716 CACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||| || || || || || |||| || || || || |||||||| Sbjct 55250075 AACCTCCAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 55250125 >seq1 Length=159038749 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | ||| | ||| || ||| ||| || || || ||||| || || Sbjct 137746850 CCTCCCCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 137746791 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || |||| |||||| |||||||| ||||| ||||| || || | ||| Sbjct 137746790 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGG 137746731 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || ||| | | | || | ||| ||| Sbjct 137746730 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACC 137746671 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || |||| ||||| || || |||||||| Sbjct 137746670 TCAAGGGTGATGGTCTTACCAGTCAGGGTTTTAACGAAGATCTGCAT 137746624 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | ||| | ||| || ||| ||| || || || ||||| || || Sbjct 137746622 CCTCCCCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 137746563 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || |||| |||||| |||||||| ||||| ||||| || || | ||| Sbjct 137746562 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGGGGG 137746503 Query 48660 ACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 137746502 ATGCCCTCCTTGTC 137746489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379859779321065