Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6 120 6e-22 seq15 114 2e-20 seq13 105 1e-17 seq4 105 1e-17 seq14 96.9 6e-15 >seq6 Length=87043187 Score = 120 bits (132), Expect = 6e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| |||||||| ||||| ||||| ||||| || || || ||||| Sbjct 51008406 GGTGAGCGTGTGGTTGCCTTTGCAGCTGTTGAGGGGATCTTCTTTTCTGGCTCCTTTGCT 51008465 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||| |||||||| ||| ||| |||| |||||| || || ||| |||||||||||| Sbjct 51008466 GCCATTTTCTGGCTAAAGAAGAGGGGGCTCATGCCAGGCCTAACCTTCTCCAACGAGCTC 51008525 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 51008526 ATCAGCAGAGACGAGG 51008541 >seq15 Length=103963436 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| || ||||| ||||| ||||| ||||| ||| || || ||||| Sbjct 25930774 GGTGAGCGTGTGGTTGCATTTGCGGCTGTTGAGGGGATCTTCTTCTCTGGGTCCTTTGCT 25930833 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||| |||||||| ||| ||| |||| |||||| || ||| ||| || || |||||| Sbjct 25930834 GCCATTTTCTGGCTGAAGAAGAGGGGGCTCATGCCTGGCCTGACCTTCTCAAATGAGCTC 25930893 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 25930894 ATCAGCAGAGACGAGG 25930909 >seq13 Length=107758822 Score = 105 bits (116), Expect = 1e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 222032 ACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGC 222091 || |||| ||| |||||||| |||||||||| || | || |||||||||| || |||| Sbjct 78356657 ACTCTCTTCATAAAGAGGTCAGGGATCCACATGGCGTAGAACAGATCTCTGGCCCTCTGC 78356716 Query 222092 TCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGC 222151 || ||| || |||| ||| |||| ||||| || ||||| | ||| |||||||||| Sbjct 78356717 TCTTCCTTCCCCGTGTTCTTCTTCAGGTCCAAGAAGTCAAACACATCAAAGTGCCACGGC 78356776 Query 222152 TCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||| || | ||| | || || |||| || Sbjct 78356777 TCCAGGTACATGGCAAACGCACCAGGTCTCT 78356807 Score = 104 bits (114), Expect = 4e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 || ||||| ||||| ||||| || || | ||| | |||| ||| | || |||||| Sbjct 78349563 ACCTGGAACTCTCCAGAGAGGACTCTGCGGGTGTAGATGTTACTGGTGTAGGGCTCGATG 78349622 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 |||||||||||||||||||||||| ||| ||| ||||||||||| |||| ||||| | Sbjct 78349623 GACTCGTTGTTGCCCAGGATCTGAGCTGTGGAGGCCGTGGGCATGGGGGCCAGCAGCAAA 78349682 Query 221243 CTGTT 221247 ||||| Sbjct 78349683 CTGTT 78349687 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 221731 CACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGT 221790 |||||| || | | |||| |||| || ||||| ||||||||||| ||| |||||||||| Sbjct 78356135 CACCTCATCATGGCTGGTGTACTCTACAATCTCGGTACAGAGGTTACTGGACTTGATGGT 78356194 Query 221791 CCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACC 221850 ||||||| | || ||| || | ||| ||||||||||||||||| |||| Sbjct 78356195 TCCCAGGTTCTGATGGTTACTTTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGGGT 78356254 Query 221851 GCCAGTCTC 221859 ||| ||||| Sbjct 78356255 GCCCGTCTC 78356263 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGA 221478 ||||| ||| | ||||||||||||||| ||| ||||||| ||| |||||| | | Sbjct 78350125 CAGGGAAGCATAGTAGATGGTCTCAAATATCTGAGTGTTGAGCTTCTGGGCCTCAGCACT 78350184 Query 221479 AGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGAT 221538 ||||| | ||||| || ||| | || ||||| ||||| || || ||||| || Sbjct 78350185 CTCAAAGGGGAAACGCATCAGAATGAAGGCATCAGCCAGACCCTGGACACCAATACCAAT 78350244 Query 221539 GGGCCTGTGTCTCCTGTTGGA 221559 ||||||||| | | ||||||| Sbjct 78350245 GGGCCTGTGGCGCTTGTTGGA 78350265 >seq4 Length=82398023 Score = 105 bits (116), Expect = 1e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 222032 ACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGC 222091 || |||| |||||||||||| |||||||||| | | || |||||||||| || |||| Sbjct 46250435 ACTCTCTTCATGAAGAGGTCAGGGATCCACATGCCGTAGAACAGATCTCTGGCCCTCTGC 46250376 Query 222092 TCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGC 222151 || ||| || |||| ||| |||| ||||| || ||||| | ||| |||||||||| Sbjct 46250375 TCTTCCTTCCCTGTGTTCTTCTTCAGGTCCAAGAAGTCAAACACATCAAAGTGCCACGGC 46250316 Query 222152 TCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||| || | ||| | || || |||| || Sbjct 46250315 TCCAGGTACATGGCAAACGCACCAGGTCTCT 46250285 Score = 100 bits (110), Expect = 5e-16 Identities = 109/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGA 221478 ||||||||||| ||||||||||||||||||| ||||||| ||| |||||||| Sbjct 46252022 CAGGGCAGCGTAGTAGATGGTCTCAAAGATCTGAGTGTTGAGCTTCTGGGCCTCGGCGCT 46251963 Query 221479 AGTGAAGGGCATACGCAGCA-TCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537 ||||| | ||||| || |||||| | || || || ||||| || |||||||| | Sbjct 46251962 CTCAAAGGGGAAACGCATCAGGATGAAAG-CATCAGCAAGACCCTGCACACCGATACCAA 46251904 Query 221538 TGGGCCTGTGTCTCCTGTTGGA 221559 |||||||||| | | ||||||| Sbjct 46251903 TGGGCCTGTGGCGCTTGTTGGA 46251882 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 || ||||| ||||| ||||| || || | ||| | ||| ||| | || ||||| Sbjct 46252580 ACCTGGAACTCTCCAGAGAGGACTCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGATA 46252521 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 ||||||||||||||||||||| || || ||| ||||||||||| |||| ||||||| Sbjct 46252520 GACTCGTTGTTGCCCAGGATCTGGGCTGTAGAGGCCGTGGGCATGGGGGCCAGCAGCAGA 46252461 Query 221243 CTGTT 221247 ||||| Sbjct 46252460 CTGTT 46252456 >seq14 Length=93901823 Score = 96.9 bits (106), Expect = 6e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || |||||| | || || || ||||| |||||||||||||| ||| || |||||||| Sbjct 93501873 GGGGAGCGGATAGTGGCGTTCGCTGCAGTGGAGGGCATCTTCTTCTCGGGGTCGTTTGCA 93501932 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 || || | ||| | ||| ||| || ||||| ||||| || |||||||||||| Sbjct 93501933 GCTATTTATTGGTTGAAGAAGAGAGGCCTGATGCCTGGGCTCACCTACTCCAACGAGCTC 93501992 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 93501993 ATCAGCAGAGACGAGG 93502008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 926149350443200