Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq23 120 2e-21 seq1 93.3 3e-13 seq4 86.0 4e-11 >seq23 Length=49854004 Score = 120 bits (132), Expect = 2e-21 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || ||||||||||| || ||||| | ||||| || | | || Sbjct 40744187 ACGAAGACGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCTGACAAGGT 40744128 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| |||||||| || ||||| || || ||||| || |||||||||||||| || Sbjct 40744127 GCGACCATCCTCAAGTTGTTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCC 40744068 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||| || || ||||| |||||| |||||||||||| || | | ||||| Sbjct 40744067 TTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCGCTGGGCTCAACCTCAAG 40744008 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || ||||| || || | ||||| ||||| || || Sbjct 40744007 GGTGATTGTTTTCCCCGTCAACGTCTTCACGAATATCTG 40743969 >seq1 Length=159038749 Score = 93.3 bits (102), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || |||||||| || || || | || || || | || || Sbjct 137747073 ACGAAGACGCAGGACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 137747014 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| || |||||||||||||| || ||||| || || || || || || || Sbjct 137747013 GCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGGATGCC 137746954 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||| || ||||| ||||| || || || ||| || | | ||||| Sbjct 137746953 CTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCAACCTCAAG 137746894 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || ||||| || || || |||||||| || || Sbjct 137746893 GGTGATGGTCTTACCAGTCAGGGTTTTAACGAAGATCTG 137746855 >seq4 Length=82398023 Score = 86.0 bits (94), Expect = 4e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || |||||||| || || ||||| | || || || | || || | | Sbjct 51881054 AGACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 51880995 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||||| || ||||| || || || || ||||| || || || || || || || ||| Sbjct 51880994 CCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 51880935 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || ||||| || ||| ||||| || ||| || | |||||||| Sbjct 51880934 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTT 51880875 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || |||||||||||||| ||||| ||||| || || Sbjct 51880874 ATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTG 51880840 Score = 86.0 bits (94), Expect = 4e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || |||||||| || || ||||| | || || || | || || | | Sbjct 51881282 AGACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 51881223 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||||| || ||||| || || || || ||||| || || || || || || || ||| Sbjct 51881222 CCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 51881163 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || ||||| || ||| ||||| || ||| || | |||||||| Sbjct 51881162 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTT 51881103 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || |||||||||||||| ||||| ||||| || || Sbjct 51881102 ATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTG 51881068 Score = 86.0 bits (94), Expect = 4e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || |||||||| || || ||||| | || || || | || || | | Sbjct 51881510 AGACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 51881451 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||||| || ||||| || || || || ||||| || || || || || || || ||| Sbjct 51881450 CCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 51881391 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || ||||| || ||| ||||| || ||| || | |||||||| Sbjct 51881390 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTT 51881331 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || |||||||||||||| ||||| ||||| || || Sbjct 51881330 ATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTG 51881296 Score = 86.0 bits (94), Expect = 4e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || |||||||| || || ||||| | || || || | || || | | Sbjct 51881738 AGACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 51881679 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||||| || ||||| || || || || ||||| || || || || || || || ||| Sbjct 51881678 CCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 51881619 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || ||||| || ||| ||||| || ||| || | |||||||| Sbjct 51881618 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTT 51881559 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || |||||||||||||| ||||| ||||| || || Sbjct 51881558 ATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTG 51881524 Score = 86.0 bits (94), Expect = 4e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || |||||||| || || ||||| | || || || | || || | | Sbjct 51881966 AGACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 51881907 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||||| || ||||| || || || || ||||| || || || || || || || ||| Sbjct 51881906 CCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 51881847 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || ||||| || ||| ||||| || ||| || | |||||||| Sbjct 51881846 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTT 51881787 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || |||||||||||||| ||||| ||||| || || Sbjct 51881786 ATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTG 51881752 Score = 86.0 bits (94), Expect = 4e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || |||||||| || || ||||| | || || || | || || | | Sbjct 51882194 AGACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 51882135 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||||| || ||||| || || || || ||||| || || || || || || || ||| Sbjct 51882134 CCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 51882075 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || ||||| || ||| ||||| || ||| || | |||||||| Sbjct 51882074 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTT 51882015 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || |||||||||||||| ||||| ||||| || || Sbjct 51882014 ATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTG 51881980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3258220945633940