Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq43226 141 1e-28 seq101900 138 1e-27 seq7820 138 1e-27 seq23 111 2e-19 >seq43226 Length=4303 Score = 141 bits (156), Expect = 1e-28 Identities = 246/353 (70%), Gaps = 6/353 (2%) Strand=Plus/Plus Query 160620 ACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTC 160679 || ||||| ||| ||||| | || ||||| || || || ||| |||| |||| || Sbjct 1971 ACCATCTCAGCGTTGGTCTTAATGGGGAAGTCTGTTCCACAGGTGTTGATCAGGTACCTC 2030 Query 160680 CATTTCGC-GCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCT 160738 || | | ||| | || | || ||| ||| || || | ||| |||||||| | | Sbjct 2031 CACTGGACAGCTGACTTCAGG-AGATCCTCCATACAGTTCAGATCAGCCTGCACTCTGGA 2089 Query 160739 CCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGA 160798 |||||| ||||| || || |||||| |||||||||||||| || ||| | ||| || Sbjct 2090 CCAGGAGGCGTATACCACACTCTCTAACTTACTGGCCACAAACACATTAGGCAGACAGGA 2149 Query 160799 CACGATTCCCACCACCGCCAGAAAGAA--CATCTTATCCGCCTTTCGGTCCACGTGCACG 160856 |||||| || ||| ||| ||| | || || | ||| | || | ||| ||| Sbjct 2150 CACGATAGCCCTCACTGCCGTCCTGAAGTCCTCGGAT--GACTTCTGATCGATGTGGACG 2207 Query 160857 CAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTA 160916 || |||| ||||||||| | ||| | ||| | || | || ||| |||||||| ||||| Sbjct 2208 CAGTACACGTTCTGAGGAGTGTACACGGCACGTAGGAGCCGCTCAAACATCTCAATCTTG 2267 Query 160917 TGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAG 160969 || ||||| || || |||||||| || || ||||| |||||| |||| || Sbjct 2268 TGGTGGATGACCATGGAGTAGGCGATGGGGAACTCCTCCTCCTCCTGACTGAG 2320 >seq101900 Length=11458 Score = 138 bits (152), Expect = 1e-27 Identities = 245/353 (69%), Gaps = 6/353 (2%) Strand=Plus/Plus Query 160620 ACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTC 160679 || ||||| ||| ||||| | || ||||| || || || ||| |||| |||| || Sbjct 1230 ACCATCTCAGCGTTGGTCTTAATGGGGAAGTCTGTTCCACAGGTGTTGATCAGGTACCTC 1289 Query 160680 CATTTCGC-GCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCT 160738 || | | ||| | || | || ||| ||| || || | ||| |||||||| | | Sbjct 1290 CACTGGACAGCTGACTTCAGG-AGATCCTCCATACAGTTCAGATCAGCCTGCACTCTGGA 1348 Query 160739 CCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGA 160798 |||||| ||||| || || |||||| |||||||||||||| || ||| | ||| || Sbjct 1349 CCAGGAGGCGTATACCACACTCTCTAACTTACTGGCCACAAACACATTAGGCAGACAGGA 1408 Query 160799 CACGATTCCCACCACCGCCAGAAAGAA--CATCTTATCCGCCTTTCGGTCCACGTGCACG 160856 |||||| || ||| ||| ||| | || || | ||| | || | ||| ||| Sbjct 1409 CACGATAGCCCTCACTGCCGTCCTGAAGTCCTCGGAT--GACTTCTGATCGATGTGGACG 1466 Query 160857 CAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTA 160916 || |||| ||||||||| | ||| | ||| | || | || || |||||||| ||||| Sbjct 1467 CAGTACACGTTCTGAGGAGTGTACACGGCACGTAGGAGCCGTTCAAACATCTCAATCTTG 1526 Query 160917 TGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAG 160969 || ||||| || || |||||||| || || ||||| |||||| |||| || Sbjct 1527 TGGTGGATGACCATGGAGTAGGCGATGGGGAACTCCTCCTCCTCCTGACTGAG 1579 >seq7820 Length=3681 Score = 138 bits (152), Expect = 1e-27 Identities = 245/353 (69%), Gaps = 6/353 (2%) Strand=Plus/Plus Query 160620 ACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTC 160679 || ||||| ||| ||||| | || ||||| || || || ||| |||| |||| || Sbjct 1739 ACCATCTCAGCGTTGGTCTTAATGGGGAAGTCTGTTCCACAGGTGTTGATCAGGTACCTC 1798 Query 160680 CATTTCGC-GCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCT 160738 || | | ||| | || | || ||| ||| || || | ||| |||||||| | | Sbjct 1799 CACTGGACAGCTGACTTCAGG-AGATCCTCCATACAGTTCAGATCAGCCTGCACTCTGGA 1857 Query 160739 CCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGA 160798 |||||| ||||| || || |||||| |||||||||||||| || ||| | ||| || Sbjct 1858 CCAGGAGGCGTATACCACACTCTCTAACTTACTGGCCACAAACACATTAGGCAGACAGGA 1917 Query 160799 CACGATTCCCACCACCGCCAGAAAGAA--CATCTTATCCGCCTTTCGGTCCACGTGCACG 160856 |||||| || ||| ||| ||| | || || | ||| | || | ||| ||| Sbjct 1918 CACGATAGCCCTCACTGCCGTCCTGAAGTCCTCGGAT--GACTTCTGATCGATGTGGACG 1975 Query 160857 CAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTA 160916 || |||| ||||||||| | ||| | ||| | || | || || |||||||| ||||| Sbjct 1976 CAGTACACGTTCTGAGGAGTGTACACGGCACGTAGGAGCCGTTCAAACATCTCAATCTTG 2035 Query 160917 TGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAG 160969 || ||||| || || |||||||| || || ||||| |||||| |||| || Sbjct 2036 TGGTGGATGACCATGGAGTAGGCGATGGGGAACTCCTCCTCCTCCTGACTGAG 2088 >seq23 Length=49854004 Score = 111 bits (122), Expect = 2e-19 Identities = 435/673 (65%), Gaps = 47/673 (7%) Strand=Plus/Minus Query 160319 GGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCA 160378 |||||| ||||| || || |||||||||||||| || || || || |||||||| ||| Sbjct 48665439 GGGCATCCGCTGCAGAGTCGCCCACAGGTGTTCATCAGGACTATAGGTGTCCTTCTCCCA 48665380 Query 160379 TTCCATGAACTCTCCGATTAACCTGTCCCGCAGA-ACGTGAGTAACGTAGGATCTGGTCA 160437 |||| | ||| || |||| | | | | |||||| ||| ||| |||| | Sbjct 48665379 CTCCAGCAGAACTCGGACCT-CCTGACTCTCCGTCACGTGACGGACGAAGGCCCTGGACG 48665321 Query 160438 CGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTG----TCTT-- 160491 | || ||||| ||| |||| ||||| || || || || || || | | |||| Sbjct 48665320 CCACGAAGTAGGCGTTGCCAGAGAACATGGGGGTGTTGATTGGTGGAGGGGTCTTCTTAA 48665261 Query 160492 ----TGTCCTGACC--GGTGTTAGACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCC 160545 |||||||||| ||||| | || || ||| | || || Sbjct 48665260 CCTCTGTCCTGACCACGGTGTCGGTGACG------TT---------GTGGTGGAACTGCC 48665216 Query 160546 ACCTGACCATCTTGT-GCGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGC 160604 | ||| || |||||| || || | || || | ||| | ||||| |||| ||| Sbjct 48665215 ATCTGCCCTTCTTGTAGCCGTTGG-TGACCTCTGACTCCATGCTGTTCTTCCCGTTCAGC 48665157 Query 160605 GATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAG 160664 || || || ||| ||||| ||| ||||| | || |||||||| || || | Sbjct 48665156 AGCTTGAGGGCCTGGACCATCTCAGCGTTGGTCTTAATGGGGAAGTCGGTTCCACAGGTG 48665097 Query 160665 TTTATCACGTACTTCCATTTCGCGCTCAGGT--CGT--GCAGGTCCCTCATGCAATTAAT 160720 || | | ||| |||| | | ||||| | | |||||||| |||||| || | Sbjct 48665096 TTGAGAAGGTATCTCCACT----GGACAGGTGACTTTAGCAGGTCCTCCATGCAGTTCAG 48665041 Query 160721 ATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAA 160780 || |||||||| | | |||||| ||||| | ||| ||||| |||||||||||||| Sbjct 48665040 GTCAGCCTGCACTCTGGACCAGGAGGCGTAGATCACGCTCTCTGTCTTACTGGCCACAAA 48664981 Query 160781 GACGTTATCGAAACACGACACGAT---TCCCACCAC-CGCCAGAAAGAACATCTTATCCG 160836 || || || || || | || || ||| | | || ||| | || || | Sbjct 48664980 CACATTGGGTAAGCAGGAAGCAATAGCTCTCACTGCACTCCTGAAGT--CCTCGGAT--G 48664925 Query 160837 CCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACC 160896 || |||| ||||| ||||| || | |||||| || | ||| | || | || | || Sbjct 48664924 ATTTCTGGTCGACGTGGACGCAGTAGACGTTCTGCGGAGTGTACAAAGCACGCAGGAGCC 48664865 Query 160897 TCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCT 160956 ||||||||||||| ||||| | ||||| || || ||||| || || || || || || | Sbjct 48664864 TCTCGAACATCTCAATCTTCTCGTGGATGACCATGGAGTAAGCGATGGGGAAGTCCGTTT 48664805 Query 160957 CCTCGCGACTCAG 160969 |||| | ||||| Sbjct 48664804 CCTCCTGGCTCAG 48664792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575544145957800