Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq15 100 3e-16 seq4 93.3 5e-14 seq14 84.2 3e-11 seq6 82.4 9e-11 >seq15 Length=103963436 Score = 100 bits (110), Expect = 3e-16 Identities = 98/124 (79%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 65087 TTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGG 65145 |||| |||||| ||| ||||| ||||||||||| ||||| || ||| || |||| ||| Sbjct 25930787 TTGCATTTGCGGCTGTTGAGGGGATCTTCTTCTCTGGGTCCTT-TGCTGCCATTTTCTGG 25930845 Query 65146 TTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGAT 65205 |||||||| |||| |||||||| ||||| |||||||||||| || || | |||| Sbjct 25930846 CTGAAGAAGAGGGGGCTCATGCCTGGCCTGACCTTCTCAAATGAGCTCATCAGCAGAGAC 25930905 Query 65206 GAGG 65209 |||| Sbjct 25930906 GAGG 25930909 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/102 (79%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 65441 AGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGA 65500 ||||||| |||||||| ||||| ||||| || || || ||||| ||||||||||||| Sbjct 25932202 AGAATCCTTTTGACTTCATGGAGAACATCTCACTGGAGGGCAAGACTAACTTCTTTGAGA 25932261 Query 65501 AGCGAGTTGGGGACTATGGGAAATTGGATGATGATGT-TGGC 65541 ||||||| ||||| || || | ||| || |||||| |||| Sbjct 25932262 AGCGAGTAGGGGAGTACCAGAGAATGGGTG-TGATGTCTGGC 25932302 >seq4 Length=82398023 Score = 93.3 bits (102), Expect = 5e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 75829 GTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCG-ATGTTTGGAAGGCTA 75887 |||||| |||||||| | | ||| ||| || || | | | | || ||| | || | Sbjct 46250804 GTATGAGCAGGAGGGTCGGGTCAA-GCGGGTGGTGAAGGCCCAGCAGGTGTGGCATGCCA 46250862 Query 75888 TTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACA 75947 || | | || ||||| || || || || || ||||||||||||||||| || || |||| Sbjct 46250863 TTATTGAGTCCCAGACTGAAACGGGTACCCCCTATATGCTTTACAAGGACGCATGCAACA 46250922 Query 75948 AGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTT 76007 |||||| || || |||| |||| || || ||| | || ||||| || |||||| Sbjct 46250923 GGAAGAGCAATCAGCAGAACCTGGGCACCATTAAGTCCAGTAACCTTTGTACTGAAATTG 46250982 Query 76008 TAGAGTACAC 76017 |||||||||| Sbjct 46250983 TAGAGTACAC 46250992 >seq14 Length=93901823 Score = 84.2 bits (92), Expect = 3e-11 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 65101 GTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGGTTGAAGAAGCGGGG 65159 |||||||| ||||||||||| ||||| || ||| ||||||||||||||||||||| | || Sbjct 93501900 GTGGAGGGCATCTTCTTCTCGGGGTCGTT-TGCAGCTATTTATTGGTTGAAGAAGAGAGG 93501958 Query 65160 TCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGG 65209 || ||||| || || || ||| || || || || | |||| |||| Sbjct 93501959 CCTGATGCCTGGGCTCACCTACTCCAACGAGCTCATCAGCAGAGACGAGG 93502008 >seq6 Length=87043187 Score = 82.4 bits (90), Expect = 9e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 65087 TTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGG 65145 |||| ||||| ||| ||||| |||||||| || || || || ||| || |||| ||| Sbjct 51008419 TTGCCTTTGCAGCTGTTGAGGGGATCTTCTTTTCTGGCTCCTT-TGCTGCCATTTTCTGG 51008477 Query 65146 TTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGAT 65205 | |||||| |||| ||||||||||||||| |||||| || || || || | |||| Sbjct 51008478 CTAAAGAAGAGGGGGCTCATGCCAGGCCTAACCTTCTCCAACGAGCTCATCAGCAGAGAC 51008537 Query 65206 GAGG 65209 |||| Sbjct 51008538 GAGG 51008541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594838392306400