Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq23 84.2 4e-11 >seq23 Length=49854004 Score = 84.2 bits (92), Expect = 4e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 ||||| || || | ||| || | || | ||| | || | |||||| || ||||| Sbjct 40744198 ATAATGCCTCCACGAAGACGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTATAG 40744139 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 ||||| || | || | || || | |||||| ||||| || || | | ||| || ||| Sbjct 40744138 TCTGACAAGGTGCGACCATCCTCAAGTTGTTTGCCAGCGAAGATCAGACGCTGCTGATCA 40744079 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || || ||||| ||||| || || || || ||||| |||||||| | Sbjct 40744078 GGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCGCTGGGC 40744019 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || || || || ||||| || || || || || | |||||||||||| || Sbjct 40744018 TCAACCTCAAGGGTGATTGTTTTCCCCGTCAACGTCTTCACGAATATCTGCATCTT 40743963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902509351899000