Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq15 122 7e-23 seq6 114 1e-20 seq9 113 4e-20 seq1 113 4e-20 >seq15 Length=103963436 Score = 122 bits (134), Expect = 7e-23 Identities = 129/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 || ||||| || || ||||||||||| ||||||| |||||||||||| ||||| || || Sbjct 21787993 AGGTCAGTTTCGGGATTGTCACATTCGGGACACAGCACAAACTTGCGAATGAATCCGTCC 21788052 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 |||| ||| || | ||| | ||||| || |||||||||||||| || ||||| ||| Sbjct 21788053 AGCATGTCTTGCAGCTTGCTCGCTTCGTGCGACCCGTTGACGATGAAGCGGTCGTTCTTG 21788112 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 || | ||| || || || |||| ||| || || ||| |||| || || Sbjct 21788113 GCGTCAAACTGGGTCTGGGCACCCAACTCACAACCAAAGAACTTGGTGGG 21788162 >seq6 Length=87043187 Score = 114 bits (126), Expect = 1e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 || || || || || ||||| || || ||||||| |||||||||||||||||| || || Sbjct 49179874 AGGTCGGTTTCGGGATTGTCGCACTCGGGACACAGCACAAACTTGCGGATGAATCCGTCC 49179933 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 |||| |||||| | ||| | |||||||| || ||||||||||| || ||||||||| Sbjct 49179934 AGCATGTCCTGCAGCTTGTTCGCCTCGTGGGACCCATTGACGATGAAGCGGTCGTTTTTG 49179993 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAA 34472 || | ||| || || || |||| ||| || || || Sbjct 49179994 GCGTCAAACTGGGTCTGGGCACCCAACTCACAACCAAA 49180031 >seq9 Length=141712163 Score = 113 bits (124), Expect = 4e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 34318 TCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGC 34377 ||||| || ||||| ||||| || ||||||| |||||| || ||||| || |||||| Sbjct 26216740 TCAGTTTCAGGGTTATCACACTCAGGACACAGCACAAATTTACGGATAAATATGTCAAGC 26216799 Query 34378 AGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAA 34437 | |||||| ||||| | || ||||| |||||||||||||| || || || || | Sbjct 26216800 ATGTCCTGCAACTTGTTCGCCTCATGGGATCCGTTGACGATGAAGCGGTCATTCTTTGCA 26216859 Query 34438 TCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 || | ||| || ||||| || ||||| || || || |||| ||||| Sbjct 26216860 TCAAACTGGGTCTGCGCACCAAGCTCACAACCAAAAAACTTGGTCGG 26216906 >seq1 Length=159038749 Score = 113 bits (124), Expect = 4e-20 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 || ||||| || ||||| ||||| || ||||||| |||||| || ||||| || |||| Sbjct 28204842 AGATCAGTTTCAGGGTTATCACACTCAGGACACAGCACAAATTTCCGGATAAATACATCT 28204901 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 |||| |||||| ||||| | || ||||| |||||||||||||| || || || || Sbjct 28204902 AGCATGTCCTGCAACTTGTTCGCCTCATGGGATCCGTTGACGATGAAGCGGTCATTCTTT 28204961 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 ||| | ||| || || || || ||||| || || || |||| ||||| Sbjct 28204962 GCATCAAACTGGGTCTGAGCACCAAGCTCACAACCAAAAAACTTGGTCGG 28205011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411673510492415