Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq23 131 1e-25 seq13 113 3e-20 seq4 104 2e-17 >seq23 Length=49854004 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||||||||| | |||||| ||||| ||||| || |||||||| || | Sbjct 40744192 CCTCCACGAAGACGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCTGAC 40744133 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| ||| || |||||||||||||| | |||| | |||||||| || ||| Sbjct 40744132 AAGGTGCGACCATCCTCAAGTTGTTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGA 40744073 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || || || | || |||||| |||| | ||| || | || || Sbjct 40744072 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCGCTGGGCTCAACC 40744013 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || || ||||| || || || || || || ||||||||||| || Sbjct 40744012 TCAAGGGTGATTGTTTTCCCCGTCAACGTCTTCACGAATATCTGCATCTT 40743963 >seq13 Length=107758822 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | ||||||||| | ||| || ||||||||||| || ||||| ||||| | Sbjct 72692393 CCTCCCCTGAGACGCAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAATCTGAG 72692452 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||| || | |||| || ||||| || ||||| Sbjct 72692453 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGCGGG 72692512 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || || ||| | || | ||||| | || || Sbjct 72692513 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTTGGCTCAACC 72692572 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | ||| || || || |||||||| Sbjct 72692573 TCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 72692619 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | ||||||||| | ||| || ||||||||||| || ||||| || || | Sbjct 72692849 CCTCCCCTGAGACGCAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCTGAG 72692908 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||| || | |||| || ||||| || ||||| Sbjct 72692909 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGCGGG 72692968 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || || ||| | || | ||||| | || || Sbjct 72692969 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTTGGCTCAACC 72693028 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || ||||| || | ||| || || || |||||||| || Sbjct 72693029 TCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATCTT 72693078 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 29558 GTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG 29617 |||||||||| | |||||||| | ||| || ||||||||||| || ||||| || || | Sbjct 72692163 GTCCTCCCCTGAGTCGCAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCTG 72692222 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 | |||||| ||| || || || ||||| || | |||| || ||||| || |||| Sbjct 72692223 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGCG 72692282 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 | || ||||| ||||| || | || || ||| | || | ||||| | || | Sbjct 72692283 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTTGGCTCAA 72692342 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || || ||||| || | ||| || || || |||||||| Sbjct 72692343 CCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 72692391 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | ||||||||| | ||| || ||||||||||| || ||||| || || | Sbjct 72692621 CCTCCCCTGAGACGCAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCTGAG 72692680 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||| || | |||| || ||||| || ||||| Sbjct 72692681 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGCGGG 72692740 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || || ||| | || | ||||| | || || Sbjct 72692741 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTTGGCTCAACC 72692800 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | ||| || || || |||||||| Sbjct 72692801 TCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 72692847 >seq4 Length=82398023 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616 ||||||||||| | ||||||||| | ||| || ||||| ||||| || ||||| || || Sbjct 51882206 TGTCCTCCCCTGAGACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCG 51882147 Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676 | | |||||| || || || || || || || | |||| | ||||| || || Sbjct 51882146 GAGAGGGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGG 51882087 Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 || || ||||| ||||| || | || || ||| | || | |||||| | || Sbjct 51882086 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCC 51882027 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| ||||| ||||| || || | ||| || || || |||||||| Sbjct 51882026 ACCTCAAGGGTTATGGTTTTACCGGTGAGGGTCTTGACGAAGATCTGCAT 51881977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384129265008855