Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3 134 1e-25 seq6 113 3e-19 seq3797 109 4e-18 seq13 104 2e-16 seq67696 100 2e-15 seq31940 98.7 7e-15 >seq3 Length=92503428 Score = 134 bits (148), Expect = 1e-25 Identities = 671/1052 (64%), Gaps = 20/1052 (2%) Strand=Plus/Plus Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491 || || |||||||||||||| || | ||||| || || || || |||||||| |||| Sbjct 60024656 ACGTTCAGAATACCATTGGCGTCGATGTCAAAGGTCACCTCGATCTGAGGGACTCCTCGT 60024715 Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551 | | ||| |||||||| | | ||| | ||||| || || || || || | Sbjct 60024716 GGGGAAGGGGGGATCCCAGAGAGCTCAAACTTCCCCAGGAGGTTGTTGTCCTTGGTCATG 60024775 Query 281552 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 281611 || || |||||| | | ||||| | || | | || || || || ||||| ||| Sbjct 60024776 GCTCTCTCTCCCTCGTAGACCTGGATCATGACCCCGGGCTGGTTGTCGGAGTAAGTGGTA 60024835 Query 281612 AATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 281670 || ||||| | | ||| | || || || ||||| | | || | |||||| | Sbjct 60024836 AAGG-TCTGGGTCTGTTTGGATGGGATGGTGGTGTTGCGTTTGATCAGGGCGGTCATGAC 60024894 Query 281671 ACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTG 281730 ||| ||||| ||||| | || || || || |||| ||||| | || | | | || Sbjct 60024895 ACCTCCAGCGGTTTCGATGCCCAGGGACAGGGGAGCCACATCCAGCAGCAGCAGGTCCTG 60024954 Query 281731 AAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAA 281789 | || ||| | | ||| | |||| | || || || || ||||| || || || | Sbjct 60024955 GACGTTCTCAGACTTGTCGCCAGATAAGA-TGGCCGCCTGGATGGCAGCGCCGTAGGCCA 60025013 Query 281790 CAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAA 281849 | || || || || || | | | ||||| | | || |||||||| | || | Sbjct 60025014 CCGCCTCGTCTGGGTTGATGCTCTTGTTTAGCTCTCGGCCGTTGAAAAAGTCCTGCAGGA 60025073 Query 281850 GTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 281908 | | ||| ||||| || || || | || ||||| || | || | || || | || Sbjct 60025074 GCT-TCTGGACCTTGGGGATCCGGGTGGAGCCTCCGACCAGGACGACATCGTGGATTTGG 60025132 Query 281909 GATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAAC 281968 | || |||| || | |||| | |||| || || || || || | || || Sbjct 60025133 GCCTTGTCCATCTTGGCATCCCTGAGGGCTTTCTCCACAGGCTCCAGTGTTCCCCTGAAG 60025192 Query 281969 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTC 282026 | ||| ||||| | || || || ||| || || || || | || || || || | Sbjct 60025193 AGGTCAGAACACATCTCCTCAAAACGAGCCCTGGT--GATGGAGGTGTAGAAGTCGATGC 60025250 Query 282027 CTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAG 282086 | || || | || |||| ||||| | | || | || || || | | || | Sbjct 60025251 CCTCAAAGAGGGAGTCAATCTCAATGCTGGCCTGGGAGCTGGAGGACAGCGTTCTCTTGG 60025310 Query 282087 CACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGATTCAAATCT 282142 | | || || |||||||| ||||| | | || |||| | ||| |||| || Sbjct 60025311 CCCTCTCGCAGGCTGTCCTCAGTCTCCTCAGAGCCCGCTTGTTCTGGCTGATG----TCC 60025366 Query 282143 GTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCT 282202 | || | ||| |||||||| || || ||| | | || || || || ||||| || Sbjct 60025367 TTCTTGTGTTTCCTCTTGAACTCCTCCACAAAGTGACTGACCAGGCGGTTGTCAAAGTCC 60025426 Query 282203 TCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGA 282262 || || |||| | ||| | ||| | ||| || | || | || | ||||| || | Sbjct 60025427 TCCCCGCCCAGGTGAGTGTCTCCAGCCGTGGCCTTCACCTCAAAGATCCCATCCTCGATG 60025486 Query 282263 GACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT-CATTTC 282321 | || | | || ||| ||| || ||||||| |||||||| || || || | || | Sbjct 60025487 GTCAGGATGGACACGTCAAAGGTGCCCCCACCCAGGTCAAAAATCAGGACGTTGCGTTCC 60025546 Query 282322 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 || | |||| ||| || | ||| || |||| || ||||| || || || || || || Sbjct 60025547 TTGGACTTGCCTTTG-TCCATACCGTAAGCAATGGCTGCAGCCGTGGGCTCGTTGATGAT 60025605 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 |||| ||||| || ||||| || ||| || || |||||||| ||||| |||||||| Sbjct 60025606 CCTCAGCACATTCAGCCCAGCGATCACTCCAGCGTCCTTAGTGGCCTGTCTCTGTGAATC 60025665 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 ||| || || ||||| || || || || |||| Sbjct 60025666 GTTGAAGTAGGCAGGGACTGTGATGACTGCAT 60025697 >seq6 Length=87043187 Score = 113 bits (124), Expect = 3e-19 Identities = 221/324 (68%), Gaps = 2/324 (1%) Strand=Plus/Minus Query 282151 TTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 282210 ||| |||||||| || || ||| | | || || || || ||||| || || || || Sbjct 38096870 TTTCCTCTTGAACTCCTCCACAAAGTGACTAACCAGGCGGTTGTCAAAGTCCTCCCCGCC 38096811 Query 282211 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 282270 || | ||| | ||| | ||| || | || | || | |||||||| | | || | Sbjct 38096810 CAGGTGAGTGTCTCCAGCCGTGGCCTTCACCTCAAAGATCCCATCTTCGATGGTCAGGAT 38096751 Query 282271 AGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT-CATTTCTTTGTCTT 282329 | || ||| ||| || ||||||| |||||||| || || || | || | | | | | Sbjct 38096750 GGACACGTCAAAGGTGCCCCCACCCAGGTCAAAAATCAGGACGTTGCGTTCCCTGGACAT 38096691 Query 282330 GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 282389 | ||| || | || || || | || || ||||| || || || || ||||||| | Sbjct 38096690 GCCTTTGTCCATG-CCGTAGGCGATGGCTGCCGCAGTGGGCTCGTTGATGATTCTCAGCA 38096632 Query 282390 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 282449 |||| || ||||| || ||| || || |||||||| ||||| ||||||||||| || | Sbjct 38096631 CATTCAGCCCAGCGATCACTCCAGCGTCCTTAGTGGCCTGTCTCTGTGAATCGTTGAAGT 38096572 Query 282450 ATGCAGGAACAGTAATAACGGCAT 282473 | ||||| || || || || |||| Sbjct 38096571 AGGCAGGGACTGTGATGACTGCAT 38096548 Score = 109 bits (120), Expect = 4e-18 Identities = 220/324 (68%), Gaps = 2/324 (1%) Strand=Plus/Minus Query 282151 TTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 282210 ||| |||||||| || || ||| | | || || || || ||||| || || || || Sbjct 38103402 TTTCCTCTTGAACTCCTCCACAAAGTGACTAACCAGGCGGTTGTCAAAGTCCTCCCCGCC 38103343 Query 282211 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 282270 || | ||| | ||| | ||| || | || | || | ||||| || | | || | Sbjct 38103342 CAGGTGAGTGTCTCCAGCCGTGGCCTTCACCTCAAAGATCCCATCCTCGATGGTCAGGAT 38103283 Query 282271 AGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT-CATTTCTTTGTCTT 282329 | || ||| ||| || ||||||| |||||||| || || || | || | | | | | Sbjct 38103282 GGACACGTCAAAGGTGCCCCCACCCAGGTCAAAAATCAGGACGTTGCGTTCCCTGGACAT 38103223 Query 282330 GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 282389 | ||| || | || || || | || || ||||| || || || || ||||||| | Sbjct 38103222 GCCTTTGTCCATG-CCGTAGGCGATGGCTGCCGCAGTGGGCTCGTTGATGATTCTCAGCA 38103164 Query 282390 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 282449 |||| || ||||| || ||| || || |||||||| ||||| ||||||||||| || | Sbjct 38103163 CATTCAGCCCAGCGATCACTCCAGCGTCCTTAGTGGCCTGTCTCTGTGAATCGTTGAAGT 38103104 Query 282450 ATGCAGGAACAGTAATAACGGCAT 282473 | ||||| || || || || |||| Sbjct 38103103 AGGCAGGGACTGTGATGACTGCAT 38103080 Score = 87.8 bits (96), Expect = 1e-11 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 282356 GCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCA 282415 || || ||||| || || || || ||||||| ||||| || ||||| || ||| || Sbjct 38086206 GCTGCCGCAGTGGGCTCGTTGATGATTCTCAGCACATTCAGCCCAGCGATCACTCCAGCG 38086147 Query 282416 TCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || |||||||| ||||| ||||||||||| || || ||||| || || || || |||| Sbjct 38086146 TCCTTAGTGGCCTGTCTCTGTGAATCGTTGAAGTAGGCAGGGACTGTGATGACTGCAT 38086089 >seq3797 Length=7621 Score = 109 bits (120), Expect = 4e-18 Identities = 220/324 (68%), Gaps = 2/324 (1%) Strand=Plus/Minus Query 282151 TTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 282210 ||| |||||||| || || ||| | | || || || || ||||| || || || || Sbjct 4165 TTTCCTCTTGAACTCCTCCACAAAGTGACTAACCAGGCGGTTGTCAAAGTCCTCCCCGCC 4106 Query 282211 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 282270 || | ||| | ||| | ||| || | || | || | ||||| || | | || | Sbjct 4105 CAGGTGAGTGTCTCCAGCCGTGGCCTTCACCTCAAAGATCCCATCCTCGATGGTCAGGAT 4046 Query 282271 AGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT-CATTTCTTTGTCTT 282329 | || ||| ||| || ||||||| |||||||| || || || | || | | | | | Sbjct 4045 GGACACGTCAAAGGTGCCCCCACCCAGGTCAAAAATCAGGACGTTGCGTTCCCTGGACAT 3986 Query 282330 GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 282389 | ||| || | || || || | || || ||||| || || || || ||||||| | Sbjct 3985 GCCTTTGTCCATG-CCGTAGGCGATGGCTGCCGCAGTGGGCTCGTTGATGATTCTCAGCA 3927 Query 282390 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 282449 |||| || ||||| || ||| || || |||||||| ||||| ||||||||||| || | Sbjct 3926 CATTCAGCCCAGCGATCACTCCAGCGTCCTTAGTGGCCTGTCTCTGTGAATCGTTGAAGT 3867 Query 282450 ATGCAGGAACAGTAATAACGGCAT 282473 | ||||| || || || || |||| Sbjct 3866 AGGCAGGGACTGTGATGACTGCAT 3843 >seq13 Length=107758822 Score = 104 bits (114), Expect = 2e-16 Identities = 109/142 (77%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 282339 CAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGAC 282398 |||| ||||| |||| ||| ||||||||||| ||||| || |||| |||||| || |||| Sbjct 62877678 CAAG-CCATAAGCAATAGCGGCAGCAGTTGGCTCATTGATGATTCGCAAAACGTTCAGAC 62877736 Query 282399 CAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAA 282458 ||| ||| |||| |||||||| || ||||| | || || || || || || || || | Sbjct 62877737 CAGAGATTGTTCCAGCATCTTTGGTTGCTTGGCGCTGAGAGTCATTGAAGTAAGCTGGCA 62877796 Query 282459 CAGTAATAACGGCATCTGTTAC 282480 | || | ||| |||| || ||| Sbjct 62877797 CTGTTACAACAGCATTTGATAC 62877818 >seq67696 Length=1646 Score = 100 bits (110), Expect = 2e-15 Identities = 196/287 (68%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 || || ||||| || || || |||| | ||| | ||| | ||| || | || | || Sbjct 1091 CGGTTGTCAAAGTCCTCCCCGCCCAGGTGAGTGTCTCCAGCCGTGGCCTTCACCTCAAAG 1150 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | ||||| || | | || | | || ||| ||| || ||||||| |||||||| Sbjct 1151 ATCCCATCCTCGATGGTCAGGATGGACACGTCAAAGGTGCCCCCACCCAGGTCAAAAATC 1210 Query 282308 AGTACATT-CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 || || || | || | | | | || ||| || | || || || | || || ||||| Sbjct 1211 AGGACGTTGCGTTCCCTGGACATGCCTTTGTCCATG-CCGTAGGCGATGGCTGCCGCAGT 1269 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 || || || || ||||||| ||||| || ||||| || ||| || || |||||||| Sbjct 1270 GGGCTCGTTGATGATTCTCAGCACATTCAGCCCAGCGATCACTCCAGCGTCCTTAGTGGC 1329 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 ||||| ||||||||||| || || ||||| || || || || |||| Sbjct 1330 CTGTCTCTGTGAATCGTTGAAGTAGGCAGGGACTGTGATGACTGCAT 1376 >seq31940 Length=4218 Score = 98.7 bits (108), Expect = 7e-15 Identities = 199/293 (68%), Gaps = 2/293 (1%) Strand=Plus/Minus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 || || || || ||||| || || || |||| | ||| | ||| | ||| || | || Sbjct 4133 ACCAGGCGGTTGTCAAAGTCCTCCCCGCCCAGGTGAGTGTCTCCAGCCGTGGCCTTCACC 4074 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | || | ||||| || | | || | | || ||| ||| || ||||||| ||| Sbjct 4073 TCAAAGATCCCATCCTCGATGGTCAGGATGGACACGTCAAAGGTGCCCCCACCCAGGTCA 4014 Query 282302 AAAATAAGTACATT-CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGC 282360 ||||| || || || | || | | | | || ||| || | || || || | || || Sbjct 4013 AAAATCAGGACGTTGCGTTCCCTGGACATGCCTTTGTCCATG-CCGTAGGCGATGGCTGC 3955 Query 282361 AGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTT 282420 ||||| || || || || ||||||| ||||| || |||| || ||| || || || Sbjct 3954 CGCAGTGGGCTCGTTGATGATTCTCAGCACATTCAGCCCAGAGATCACTCCAGCGTCCTT 3895 Query 282421 AGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 |||||| ||||| ||||||||||| || || ||||| || || || || |||| Sbjct 3894 AGTGGCCTGTCTCTGTGAATCGTTGAAGTAGGCAGGGACTGTGATGACTGCAT 3842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3729232570587030