Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq23 152 1e-31 seq13 138 2e-27 seq4 125 1e-23 seq1 107 4e-18 seq16 91.5 3e-13 seq10 89.7 1e-12 seq22 84.2 4e-11 >seq23 Length=49854004 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | |||||| || | || || || || |||||||| || ||||| || || Sbjct 40744192 CCTCCACGAAGACGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCTGAC 40744133 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| || || |||||||| ||||| ||||| || | || ||||| ||||| Sbjct 40744132 AAGGTGCGACCATCCTCAAGTTGTTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGA 40744073 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || ||||||||||| ||||| | || || || Sbjct 40744072 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCGCTGGGCTCAACC 40744013 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || || || ||||||||||| || ||||||||||| Sbjct 40744012 TCAAGGGTGATTGTTTTCCCCGTCAACGTCTTCACGAATATCTGCAT 40743966 >seq13 Length=107758822 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| || | |||||| || | || || || ||||||||||| || || ||||| | Sbjct 72692391 TACCTCCCCTGAGACGCAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAATCTG 72692450 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || || || || || ||||| || || || || ||||| | Sbjct 72692451 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGCG 72692510 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || ||||| ||||| || || | || || | Sbjct 72692511 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTTGGCTCAA 72692570 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || ||||||||||||| ||||| || || |||||||| Sbjct 72692571 CCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 72692619 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| || | |||||| || | || || || ||||||||||| || || || || | Sbjct 72692619 TACCTCCCCTGAGACGCAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCTG 72692678 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || || || || || ||||| || || || || ||||| | Sbjct 72692679 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGCG 72692738 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || ||||| ||||| || || | || || | Sbjct 72692739 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTTGGCTCAA 72692798 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || ||||||||||||| ||||| || || |||||||| Sbjct 72692799 CCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 72692847 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| || | |||||| || | || || || ||||||||||| || || || || | Sbjct 72692847 TACCTCCCCTGAGACGCAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCTG 72692906 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || || || || || ||||| || || || || ||||| | Sbjct 72692907 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGCG 72692966 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || ||||| ||||| || || | || || | Sbjct 72692967 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTTGGCTCAA 72693026 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || ||||||||||||| ||||| || || |||||||| Sbjct 72693027 CCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 72693075 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | ||||| || | || || || ||||||||||| || || || || || Sbjct 72692165 CCTCCCCTGAGTCGCAGCACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCTGAG 72692224 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || || || ||||| || || || || ||||| || Sbjct 72692225 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGCGGG 72692284 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || ||||| ||||| || || | || || || Sbjct 72692285 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTTGGCTCAACC 72692344 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||||||||||| ||||| || || |||||||| Sbjct 72692345 TCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 72692391 >seq4 Length=82398023 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | |||||| || | || || || || |||||||| || || || || || Sbjct 51880835 CCTCCCCTGAGACGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 51880776 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| || || || || || ||||| || | || || ||||| || Sbjct 51880775 AGGGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 51880716 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || ||||| ||||| || ||| | || || || Sbjct 51880715 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 51880656 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||||||||| | ||||| || || |||||||| Sbjct 51880655 TCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCAT 51880609 >seq1 Length=159038749 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | |||||| || | || || || || || ||||| || || || || || Sbjct 137747078 CCTCCACGAAGACGCAGGACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 137747019 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || |||||||||||||| || | || || ||||| || Sbjct 137747018 AGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGG 137746959 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || || || || || || ||| | || || || Sbjct 137746958 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCAACC 137746899 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||| || |||| || || || || |||||||| Sbjct 137746898 TCAAGGGTGATGGTCTTACCAGTCAGGGTTTTAACGAAGATCTGCAT 137746852 >seq16 Length=87796322 Score = 91.5 bits (100), Expect = 3e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||| ||||||||||| || ||||| || || ||||||||||| ||||| | || || || Sbjct 43457550 TATACCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCGCTGGGCTCAAC 43457609 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || || || ||||||||||| || ||||||||||| Sbjct 43457610 CTCAAGGGTGATTGTTTTCCCCGTCAACGTCTTCACGAATATCTGCAT 43457657 >seq10 Length=116138521 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || ||||||||||| ||||| | || || || Sbjct 14713801 ATACCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCGCTGGGCTCAACC 14713742 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || || || ||||||||||| ||||| |||||||| Sbjct 14713741 TCAAGGGTGATGGTTTTCCCCGTCAACGTCTTCACAAAGATCTGCAT 14713695 >seq22 Length=63420196 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 82652 ACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTC 82711 ||| ||||| || | ||| |||| ||||| || | || |||| ||| | || ||||| Sbjct 34801106 ACCATCTTCAAGCTATTTGCCAGTGAAGATCAGACCCTGCTGATTAGGATGAATACCTTC 34801047 Query 82712 CTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGT 82771 |||||| || ||||| || || ||||||||||| | ||| | || || || || | || Sbjct 34801046 CTTATCCTGGATCTTGGCCTTGACATTTTCAATAGCATCGCTGGGCTCAACCTCAAGGGT 34800987 Query 82772 TATCGTCTTGCCTGTCAACGTCTTTACAAATATCTG 82807 || | || | || || ||||| ||||| ||||| Sbjct 34800986 GATGTTTTTTTCCGTTAATGTCTTCACAAAGATCTG 34800951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 978906768800545