Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 seq4 89.7 5e-13 seq11 84.2 2e-11 >seq1 Length=159038749 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| ||| | | | ||||| || || |||||||||||| || ||| || | Sbjct 137747066 CGCAGGACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 137747007 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| |||||||| || ||||| || ||||| || || Sbjct 137747006 TCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTG 137746947 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | || | || || | ||||| || || | || | Sbjct 137746946 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 137746887 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||||||||| ||||| | ||| |||||||| Sbjct 137746886 GTCTTACCAGTCAGGGTTTTAACGAAGATCTGCAT 137746852 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || ||| || |||||| ||||| || |||| | Sbjct 137746817 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 137746758 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || ||||| || ||||| || || || || || || | Sbjct 137746757 AAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACA 137746698 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || || | || | || ||||||||||| ||||| Sbjct 137746697 TTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTACCAGTCAGGGTTTTA 137746638 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 137746637 ACGAAGATCTGCAT 137746624 >seq4 Length=82398023 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | |||||||| || |||||||||||| | ||| || Sbjct 51881051 CGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 51880992 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || |||| |||| |||||||| || ||||| || ||||| || || Sbjct 51880991 TCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTG 51880932 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || || | |||||||| || | || | Sbjct 51880931 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATG 51880872 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 |||||||| || || || || | ||| ||||||||| || Sbjct 51880871 GTTTTACCGGTGAGGGTCTTGACGAAGATCTGCATGCCT 51880833 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | |||||||| || |||||||||||| | ||| || Sbjct 51881279 CGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 51881220 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || |||| |||| |||||||| || ||||| || ||||| || || Sbjct 51881219 TCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTG 51881160 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || || | |||||||| || | || | Sbjct 51881159 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATG 51881100 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 |||||||| || || || || | ||| ||||||||| || Sbjct 51881099 GTTTTACCGGTGAGGGTCTTGACGAAGATCTGCATGCCT 51881061 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | |||||||| || |||||||||||| | ||| || Sbjct 51881507 CGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 51881448 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || |||| |||| |||||||| || ||||| || ||||| || || Sbjct 51881447 TCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTG 51881388 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || || | |||||||| || | || | Sbjct 51881387 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATG 51881328 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 |||||||| || || || || | ||| ||||||||| || Sbjct 51881327 GTTTTACCGGTGAGGGTCTTGACGAAGATCTGCATGCCT 51881289 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | |||||||| || |||||||||||| | ||| || Sbjct 51881735 CGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 51881676 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || |||| |||| |||||||| || ||||| || ||||| || || Sbjct 51881675 TCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTG 51881616 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || || | |||||||| || | || | Sbjct 51881615 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATG 51881556 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 |||||||| || || || || | ||| ||||||||| || Sbjct 51881555 GTTTTACCGGTGAGGGTCTTGACGAAGATCTGCATGCCT 51881517 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | |||||||| || |||||||||||| | ||| || Sbjct 51881963 CGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 51881904 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || |||| |||| |||||||| || ||||| || ||||| || || Sbjct 51881903 TCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTG 51881844 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || || | |||||||| || | || | Sbjct 51881843 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATG 51881784 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 |||||||| || || || || | ||| ||||||||| || Sbjct 51881783 GTTTTACCGGTGAGGGTCTTGACGAAGATCTGCATGCCT 51881745 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | |||||||| || |||||||||||| | ||| || Sbjct 51882191 CGCAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 51882132 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || |||| |||| |||||||| || ||||| || ||||| || || Sbjct 51882131 TCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTG 51882072 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || || | |||||||| || | || | Sbjct 51882071 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTTATG 51882012 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 |||||||| || || || || | ||| ||||||||| || Sbjct 51882011 GTTTTACCGGTGAGGGTCTTGACGAAGATCTGCATGCCT 51881973 >seq11 Length=93888508 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| |||||||||||| | || || |||||| ||||| || || | Sbjct 55250160 GACTCCTTTTGGATGTTGTAGTCGGAGAGCGTGCGACCATCTTCCAGCTGCTTGCCAGCG 55250219 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || ||||| || ||||| || || || || || || | Sbjct 55250220 AAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACA 55250279 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| ||||||| || || | || | || ||||||||||| || || Sbjct 55250280 TTCTCGATGGTGTCGCTCGGCTCAACCTCCAGGGTGATGGTCTTACCAGTCAGGGTCTTC 55250339 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 55250340 ACGAAGATCTGCAT 55250353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475228104085800