Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq29 172 6e-38 seq19 141 1e-28 >seq29 Length=42488238 Score = 172 bits (190), Expect = 6e-38 Identities = 148/183 (81%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 146976 CCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTAT 147035 |||| ||| || || || | |||||| | |||||||||||| || | ||||||||| || Sbjct 12016585 CCCCACCTTGAGTCCTGTGATGTGGGCGATCATGTAGGTGAGGAGGGCGTAGCTGGCGAT 12016526 Query 147036 GTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTC 147095 ||||||||| || |||| ||||||||||||||| | |||||||||||||||||| | ||| Sbjct 12016525 GTTGAAGGGCACTCCCAAGCCCATGTCCCCCGAGCGCTGGTACAGCTGGCACGACAACTC 12016466 Query 147096 CCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAG 147155 ||| || || || |||||||||||| ||||| || |||||| ||||| |||||| Sbjct 12016465 CCCATCAATGACATAGAACTGGCACAGGGCATGGCAGGGGGGCAGCACCATGTGGGGCAG 12016406 Query 147156 GTC 147158 ||| Sbjct 12016405 GTC 12016403 >seq19 Length=82978132 Score = 141 bits (156), Expect = 1e-28 Identities = 130/163 (80%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 146985 AAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGG 147044 ||| || || | |||||| | |||||||||||| | | ||||||||| ||||||||||| Sbjct 29462965 AAGTCCTGTGATGTGGGCGATCATGTAGGTGAGGATGGCGTAGCTGGCGATGTTGAAGGG 29462906 Query 147045 GACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGC 147104 || ||| |||||||||||||||| | ||| ||||||||||||| |||| |||||| Sbjct 29462905 CACTCCCTGGCCCATGTCCCCCGAGCACTGATACAGCTGGCACGGCAGCTTCCCGTCAAT 29462846 Query 147105 CACGTAAAACTGGCACAGGATGTGGCA-CGGCGGCAGCGCCAT 147146 ||||| ||||| |||||| ||||| || || |||||||| Sbjct 29462845 TACGTACAACTGACACAGGGCATGGCAGGGGGGGAAGCGCCAT 29462803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581794754292000