Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq3 165 1e-35 seq14 161 1e-34 seq10 89.7 7e-13 >seq3 Length=92503428 Score = 165 bits (182), Expect = 1e-35 Identities = 217/301 (72%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 213930 TCTATGGCGAGACGCTGGAAAAACAGCACCAGTTGCGTCTGTTCAAGGACGGTAAAATGA 213989 ||||||| || || ||||| | ||||||| || || | | ||||||| | || ||| ||| Sbjct 14959410 TCTATGGAGACACTCTGGAGAGACAGCACAAGCTGAGGCAGTTCAAGAATGGCAAACTGA 14959469 Query 213990 AGTACCAGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATA 214049 |||| ||| || | | || || |||||||| || || ||||||| |||| | | Sbjct 14959470 AGTATCAGGTTGTGAATGGCGAGGTCTACCCCCCATTGGTAAAGGAGGTTGGAGTCGAGA 14959529 Query 214050 TGGTTTACGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTG 214109 || || |||| ||| | ||| | || ||||| |||| ||||| | || | Sbjct 14959530 TGCACTATCCACCCCACGTGCTCGAGGATCACCGCTTCGCTGTGGGCCACGAGCTTTTCG 14959589 Query 214110 GACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTT 214169 | || || |||||| ||||| ||||||||| |||||||||||||| |||||| | || | Sbjct 14959590 GCCTGGTCCCCGGTCTCATGATGTACGCCACCATCTGGCTGAGAGAACACAACCGCGTCT 14959649 Query 214170 GCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGATCACTC 214229 | ||||| ||| || ||||| || |||||| ||||||||| | ||||||| ||| | Sbjct 14959650 GTGACGTCATGATGCAGGAGCATCCCGAATGGGACGACGAACGCATTTTCCAGACCACAC 14959709 Query 214230 G 214230 | Sbjct 14959710 G 14959710 >seq14 Length=93901823 Score = 161 bits (178), Expect = 1e-34 Identities = 215/299 (72%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 213932 TATGGCGAGACGCTGGAAAAACAGCACCAGTTGCGTCTGTTCAAGGACGGTAAAATGAAG 213991 ||||| || | ||||| | ||||||| || || | ||||||||||| || ||| ||||| Sbjct 14382486 TATGGAGACAGTCTGGAGAGACAGCACAAGCTGAGGCTGTTCAAGGATGGCAAACTGAAG 14382545 Query 213992 TACCAGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATG 214051 || ||| || | | || || |||||||| || || | ||||| |||| | ||| Sbjct 14382546 TATCAGGTTTTGAATGGCGAGGTCTACCCCCCATTGGTAAGGGAGGTTGGAGTCGAGATG 14382605 Query 214052 GTTTACGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGA 214111 ||| |||| || |||| || || ||||| |||| ||||| ||||| Sbjct 14382606 CACTACCCACCCCAAGTGGCCGAGGAGCACCGCTTCGCTGTGGGCCACGAGCATTTTGGC 14382665 Query 214112 CTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGC 214171 || || ||||| ||||| ||||||||| ||||||||| | ||||||||| | || || Sbjct 14382666 CTGGTCCCCGGCCTCATGATGTACGCCACCATCTGGCTGCGCGAGCACAACCGTGTCTGT 14382725 Query 214172 GACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGATCACTCG 214230 ||||| |||| || ||||| || |||||| ||||||||| | ||||||| ||| || Sbjct 14382726 GACGTCCTGAGGCAGGAGCATCCCGAATGGGACGACGAACGCATCTTCCAGACCACACG 14382784 >seq10 Length=116138521 Score = 89.7 bits (98), Expect = 7e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 214082 CGTTTCGCACTGGGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATT 214141 || ||||| |||| | ||| ||| || || ||||| ||| ||||| ||||||| | | Sbjct 47012475 CGCTTCGCTGTGGGCCATGAGGCGTTCGGCCTGGTGCCTGGTCTCATGATGTACGCTACT 47012416 Query 214142 ATCTGGCTGAGAGAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGG 214201 ||||||||||| || |||||| | || || || || ||||| | | |||||||| ||| Sbjct 47012415 ATCTGGCTGAGGGAACACAACCGCGTCTGTGATGTCCTGAAGGAGGTCCACCCGGACTGG 47012356 Query 214202 AACGACGAACAGCTGTTCCAGA 214223 | || || ||| ||||||| Sbjct 47012355 GATGATGATAGGCTCTTCCAGA 47012334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 721241710207200