Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6 102 1e-16 seq15 98.7 1e-15 seq4 98.7 1e-15 >seq6 Length=87043187 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| ||||| || || | ||||| || || || || || ||||| || || | ||| | Sbjct 51008541 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTTAGGCCTGGCATGAGCCCCCTCTTCT 51008482 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| || ||||||||||| || |||||||||||||| || || || |||||||| | Sbjct 51008481 TTAGCCAGAAAATGGCAGCAAAGGAGCCAGAAAAGAAGATCCCCTCAACAGCTGCAAAGG 51008422 Query 39759 CAAC 39762 |||| Sbjct 51008421 CAAC 51008418 >seq15 Length=103963436 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| ||||| || || | || || || || || || |||||||| || || | ||| | Sbjct 25930909 CCTCGTCTCTGCTGATGAGCTCATTTGAGAAGGTCAGGCCAGGCATGAGCCCCCTCTTCT 25930850 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| || ||||||||||| || ||||| |||||||| || || || || ||||||| Sbjct 25930849 TCAGCCAGAAAATGGCAGCAAAGGACCCAGAGAAGAAGATCCCCTCAACAGCCGCAAATG 25930790 Query 39759 CAAC 39762 |||| Sbjct 25930789 CAAC 25930786 >seq4 Length=82398023 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 || || ||||| || ||||| | || || || ||||| || |||||||| ||||| || Sbjct 46250980 ATTTCAGTACAAAGGTTACTGGACTTAATGGTGCCCAGGTTCTGCTGATTGCTCTTCCTG 46250921 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 || || |||||||||||||| ||| | || ||||| |||||| |||| || || ||||| Sbjct 46250920 TTGCATGCGTCCTTGTAAAGCATATAGGGGGTACCCGTTTCAGTCTGGGACTCAATAAT 46250862 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 || || ||||| || ||||| | || || || ||||| || |||||||| ||||| || Sbjct 48906090 ATTTCGGTACAAAGGTTACTGGACTTAATGGTGCCCAGGTTCTGCTGATTGCTCTTCCTG 48906149 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 || || ||||||||||||| ||| | || ||||| || ||| |||| || || ||||| Sbjct 48906150 TTGCATGCGTCCTTGTAAATCATATAGGGGGTACCCGTCTCAGTCTGGGACTCAATAAT 48906208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 684915433594200