Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq15 91.5 1e-13 seq6 82.4 6e-11 >seq15 Length=103963436 Score = 91.5 bits (100), Expect = 1e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 77865 CTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTGGGA 77924 |||||||||| |||||||||| | |||| |||||||||||| | ||| ||||| Sbjct 44992863 CTCTGACAAATTCCCAGGCATCCTTTTCTGCTGCAAACTTCTTGTAGCTGGCATATGGGA 44992922 Query 77925 ATTTGTCTACTTGGCTCTTACATTCATCCC 77954 | ||||| |||||||||||||||||||||| Sbjct 44992923 ACTTGTCGACTTGGCTCTTACATTCATCCC 44992952 >seq6 Length=87043187 Score = 82.4 bits (90), Expect = 6e-11 Identities = 80/102 (78%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 77855 ACATTGCCTT--CTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATA 77912 ||||||| || |||| || || ||||||||||| | || | ||||||||||| | Sbjct 73984555 ACATTGCTTTGCCTCTCACGAAAGCCCAGGCATCCTTTTCAGCAGCAAACTTCTTGTAGC 73984496 Query 77913 CGGCTGCTGGGAATTTGTCTACTTGGCTCTTACATTCATCCC 77954 ||| |||||| ||||| |||||||||||||||||||||| Sbjct 73984495 TGGCATATGGGAACTTGTCAACTTGGCTCTTACATTCATCCC 73984454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396331442340775