Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10]
232,155 sequences; 2,966,890,203 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq1 86.0 5e-12
seq11 84.2 2e-11
>seq1
Length=159038749
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || ||||||||| || | |||| | ||||| ||||| || |||
Sbjct 137746592 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 137746533
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| | || |||||||| || || || || | ||||| || || ||||||| ||
Sbjct 137746532 GCAAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 137746473
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||| ||| ||||| || || || || | || || || || ||
Sbjct 137746472 ACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTACCAGTTAGGGTC 137746413
Query 27231 TTCACAAAGATTTGCAT 27247
||||||||||| |||||
Sbjct 137746412 TTCACAAAGATCTGCAT 137746396
>seq11
Length=93888508
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/201 (69%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || ||||||||| | |||| | ||||| ||||| || ||
Sbjct 55250385 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCATCTTCCAGCTGCTTGCCA 55250444
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | || |||||||| || || || || | ||||| || || ||||||| ||
Sbjct 55250445 GCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 55250504
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||| ||| || || ||||| || || | ||||| || || ||
Sbjct 55250505 ACATTCTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTAAGGGTC 55250564
Query 27231 TTCACAAAGATTTGCATAGCT 27251
||||||||||| |||||| ||
Sbjct 55250565 TTCACAAAGATCTGCATACCT 55250585
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 423732095256360
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |