Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq13 105 8e-18 seq15 95.1 2e-14 seq14 84.2 3e-11 seq6 84.2 3e-11 >seq13 Length=107758822 Score = 105 bits (116), Expect = 8e-18 Identities = 99/125 (79%), Gaps = 6/125 (5%) Strand=Plus/Plus Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACT---CTTAATCGTCCCCAAATTCTTT 111334 |||||||||| ||| || ||||| | ||| ||| ||| || || |||| |||| Sbjct 78356151 GTGTACTCTACAATCTCGGTACAGAGGTT---ACTGGACTTGATGGTTCCCAGGTTCTGA 78356207 Query 111335 TGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTC 111394 |||||||| ||| ||||||| || |||||||||||||||||||| || |||||||| ||| Sbjct 78356208 TGGTTACTTTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGGGTGCCCGTCTCAGTC 78356267 Query 111395 TGTGA 111399 || || Sbjct 78356268 TGGGA 78356272 >seq15 Length=103963436 Score = 95.1 bits (104), Expect = 2e-14 Identities = 97/124 (78%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 |||| |||| | || || |||||||||||| || || |||||||| |||| ||||| Sbjct 25930909 CCTCGTCTCTGCTGATGAGCTCATTTGAGAAGGTCAGGCCAGGCATGAGCCCCCTCTTCT 25930850 Query 122738 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 ||| ||| |||| || ||| || ||||| ||||||||||| ||||| ||| |||||| Sbjct 25930849 TCAGCCAGAAAATGGCAGCA-AAGGACCCAGAGAAGAAGATCCCCTCAACAGCCGCAAAT 25930791 Query 122797 GCAA 122800 |||| Sbjct 25930790 GCAA 25930787 >seq14 Length=93901823 Score = 84.2 bits (92), Expect = 3e-11 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 |||| |||| | || || || || ||| || || || ||||| || || | ||||| Sbjct 93502008 CCTCGTCTCTGCTGATGAGCTCGTTGGAGTAGGTGAGCCCAGGCATCAGGCCTCTCTTCT 93501949 Query 122738 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786 |||||||||||||||| ||| || ||||| ||||||||||| |||||||| Sbjct 93501948 TCAACCAATAAATAGCTGCA-AACGACCCCGAGAAGAAGATGCCCTCCAC 93501900 >seq6 Length=87043187 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || ||||| |||||||||||||||||||| ||||| || || || ||||| ||||| Sbjct 51011899 TACTCCCCTACCCGCTTCTCAAAGAAGTTAGTCTTGCCCTCCAGTGAGATGTTCTCCATG 51011840 Query 122431 AAGTCAAATGGATTCT 122446 |||||||||||||||| Sbjct 51011839 AAGTCAAATGGATTCT 51011824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626209490388000