Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq15 125 9e-24 seq6 111 2e-19 seq4 100 4e-16 >seq15 Length=103963436 Score = 125 bits (138), Expect = 9e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| ||||| |||||| ||| || |||||||| |||| ||||| Sbjct 25930909 CCTCGTCTCTGCTGATGAGCTCATTTGAGAAGGTCAGGCCAGGCATGAGCCCCCTCTTCT 25930850 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| ||||||||| ||| ||| || |||||||||||||||||||| ||| ||| || | Sbjct 25930849 TCAGCCAGAAAATGGCAGCAAAGGACCCAGAGAAGAAGATCCCCTCAACAGCCGCAAATG 25930790 Query 130155 CAAAGAGACGCTCA 130168 ||| | ||||||| Sbjct 25930789 CAACCACACGCTCA 25930776 >seq6 Length=87043187 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||||| || ||||||||||| |||| ||||| Sbjct 51008541 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTTAGGCCTGGCATGAGCCCCCTCTTCT 51008482 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 | | ||||||||| ||| ||| |||||||| |||||||||||||| ||| || || | Sbjct 51008481 TTAGCCAGAAAATGGCAGCAAAGGAGCCAGAAAAGAAGATCCCCTCAACAGCTGCAAAGG 51008422 Query 130155 CAAAGAGACGCTCA 130168 ||| | ||||||| Sbjct 51008421 CAACCACACGCTCA 51008408 >seq4 Length=82398023 Score = 100 bits (110), Expect = 4e-16 Identities = 118/158 (75%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTG 118796 |||||| | | |||||||||| |||||| || || | ||| || ||| |||||||| Sbjct 48906065 CTCATCATGGCCGGTGTACTCTACAATTTCGGTACAAAGGTTACTGGACT--TAATGGTG 48906122 Query 118797 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 118856 |||| ||||| ||||| ||| |||| || || |||||||||| ||| || || || Sbjct 48906123 CCCAGGTTCTGCTGATTGCTCTTCCTGTTGCATGCGTCCTTGTAAATCATATAGGGGGTA 48906182 Query 118857 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGAC 118894 |||||||| || ||||||| | ||| || | ||| || Sbjct 48906183 CCCGTCTCAGTCTGGGACTCAATAATGGCATGCCACAC 48906220 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/145 (76%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTGCCCAAGTTCTTTT 118809 |||||||||| |||||| || || | ||| || ||| |||||||||||| ||||| | Sbjct 46250992 GTGTACTCTACAATTTCAGTACAAAGGTTACTGGACT--TAATGGTGCCCAGGTTCTGCT 46250935 Query 118810 GATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTT 118869 |||| ||| |||| || || |||||||||||||| || || || ||||| || || | Sbjct 46250934 GATTGCTCTTCCTGTTGCATGCGTCCTTGTAAAGCATATAGGGGGTACCCGTTTCAGTCT 46250875 Query 118870 GGGACTTGAGAATAGCCTTCCAGAC 118894 |||||| | ||| || | ||| || Sbjct 46250874 GGGACTCAATAATGGCATGCCACAC 46250850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616640539701800