Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq15 190 6e-43 seq23 176 1e-38 seq11 134 4e-26 seq1 131 5e-25 seq20 120 9e-22 seq22 114 4e-20 seq16 93.3 1e-13 seq13 91.5 4e-13 seq4 89.7 2e-12 seq5 86.0 2e-11 >seq15 Length=103963436 Score = 190 bits (210), Expect = 6e-43 Identities = 518/789 (66%), Gaps = 8/789 (1%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 |||||||| || || |||||| | | || || |||||||| |||||||| || || | Sbjct 97080368 CCCGAAGAGATCTCCTCAATGATCCTGGTCAAGATGAAGGAGATTGCTGAGGCCTACCTG 97080309 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || | | || | |||| || || || || |||||||| || || || ||||| | Sbjct 97080308 GGCCAGAAGGTGTCCAATGCAGTCATCACAGTCCCAGCCTACTTCAACGACTCCCAGAGG 97080249 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || ||||| || || || | || |||| || || || || || ||||| Sbjct 97080248 CAGGCTACTAAAGACGCCGGGGTGATCTCTGGTCTAAACGTCCTGAGGATCATCAATGAG 97080189 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAA---AATGAGTGACCAAGaaaaaaaT 349768 ||||| || || || || || || || | ||||| || ||| || ||| ||| Sbjct 97080188 CCCACGGCGGCGGCTATCGCTTACGGCTTGGATAAGGGAAAGAGAGAG---GAACGCAAT 97080132 Query 349769 ATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAG 349828 | || || |||||| | || || || || ||||| || ||| | | || | || || Sbjct 97080131 GTACTCATCTTTGATCTCGGCGGAGGCACCTTTGACGTCTCAATCTTGACCATCGAGGAT 97080072 Query 349829 GGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT 349888 || || ||||| || || || || |||| || || || || || || || || ||||| Sbjct 97080071 GGGATATTTGAGGTGAAGGCCACATCTGGGGACACTCACCTGGGAGGGGAGGACTTTGAC 97080012 Query 349889 AATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGA 349948 || || || || || ||||| | || || ||| | | || | || || | Sbjct 97080011 AACCGCCTGGTCAACCACTTTGTGGAGGAGTTCAAGAGGAAGAACAAGAAGGACATCAGT 97079952 Query 349949 GATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTA 350008 | | || ||| || | | || |||||||| ||||| | || ||| | | | Sbjct 97079951 CAGCACAAGAGGGCAGTGAGGAGACTTAGAACTGCCTGTGAGAGGGCCAAGAGAACTCTC 97079892 Query 350009 TCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTT 350068 || || | | |||| || ||||| || || || || ||| |||| || |||| Sbjct 97079891 TCCTCCAGTTCCCAGGCCAGCATTGAGATCGACTCCCTCTTTGAAGGCATCGACTTCTAC 97079832 Query 350069 TCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATG 350128 | || || || | ||||||||||||||| | ||| || || || | ||| || Sbjct 97079831 ACCTCCATCACCAGGGCTCGGTTTGAAGAACTCAACTCGGAGCTCTTCAGGGGAACCCTG 97079772 Query 350129 GATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTA 350188 || ||||||||||||| || |||||||| || ||| ||| |||| | | ||| | Sbjct 97079771 GACCCTGTGGAAAAAGCCTTGAAAGATGCCAAGATGGACAAGGCTCAGGTCCACGAAATC 97079712 Query 350189 GTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTT 350248 || | |||||||| || ||||| || || || | || || | || || ||||| Sbjct 97079711 GTCCTGGTTGGTGGCTCCACACGAATCCCTAAGATCCAGAAGCTCCTGCAGGACTTTTTC 97079652 Query 350249 AATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGC 350307 || || | |||| | | ||| | || || ||||||||||| || || || |||||||| Sbjct 97079651 AACGGAAGGGAACTCAACAAGAGC-ATCAACCCAGATGAAGCAGTGGCGTACGGTGCTGC 97079593 Query 350308 TGTTCAGGC 350316 || ||||| Sbjct 97079592 AGTCCAGGC 97079584 >seq23 Length=49854004 Score = 176 bits (194), Expect = 1e-38 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 || || ||||| | | || ||||||||||| || |||||||| || || ||||| || Sbjct 40744195 ATGCCTCCACGAAGACGCAGCACAAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCT 40744136 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || || || || ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| Sbjct 40744135 GACAAGGTGCGACCATCCTCAAGTTGTTTGCCAGCGAAGATCAGACGCTGCTGATCAGGA 40744076 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 ||||| ||||| |||||||| || || || || ||||| ||||| | ||| || ||| Sbjct 40744075 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCGCTGGGCTCA 40744016 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||| || || || | || || || || |||||||| Sbjct 40744015 ACCTCAAGGGTGATTGTTTTCCCCGTCAACGTCTTCACGAATATCTGCAT 40743966 >seq11 Length=93888508 Score = 134 bits (148), Expect = 4e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || |||||||| || || ||||| || || || || || || || | || || |||||| Sbjct 55250598 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCT 55250657 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||| ||||| ||||||||||| || ||||| || || || || ||| Sbjct 55250658 TCCAGCTGCTTGCCAGCGAAGATCAGACGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCC 55250717 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || || || | ||| || || || || || || | ||| Sbjct 55250718 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTC 55250777 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||||| ||||| ||||| || |||||||| Sbjct 55250778 TTTCCGGTAAGTGTCTTTACGAAGATCTGCAT 55250809 Score = 122 bits (134), Expect = 3e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || ||||||||||| ||||| || || || || || || || Sbjct 55249899 CCACCACGGAGACGCAGGACCAGATGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 55249958 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || |||||||| || || || ||||| ||||| || || ||||| || || || Sbjct 55249959 AGAGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCTGGGGGG 55250018 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || ||||| || || || || ||||| || || | ||| || ||||| Sbjct 55250019 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTCGGCTCAACC 55250078 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || || || || || || || |||||||| Sbjct 55250079 TCCAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 55250125 >seq1 Length=159038749 Score = 131 bits (144), Expect = 5e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || |||||||| || ||||| || || || || || || || | || || |||||| Sbjct 137747063 AGGACCAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 137747004 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || |||||||||||||| ||||| ||||| || || || || || || || ||| Sbjct 137747003 TCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 137746944 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || || || | ||| || ||||| ||||| || | ||| Sbjct 137746943 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 137746884 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || ||||| || || |||||||| Sbjct 137746883 TTACCAGTCAGGGTTTTAACGAAGATCTGCAT 137746852 Score = 86.0 bits (94), Expect = 2e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || |||||||||| |||||| || || | || | | || || ||||||| | ||| Sbjct 127872369 AAGATGAAGGAAACTGCTGAGGCTTACCTGGGAAAGAAGGTCACACATGCTGTGGTCACT 127872310 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 ||||| ||||| || ||||||||||||||| || || || |||||||| ||| || Sbjct 127872309 GTACCCGCCTACTTCAATGATGCCCAGCGTCGGGCCACCAAGGATGCTGGATTCATCGCT 127872250 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACC 349713 || |||||| | || || || ||||| || Sbjct 127872249 GGCTTAAATATCACGAGGATCATCAATGAGCC 127872218 >seq20 Length=86795997 Score = 120 bits (132), Expect = 9e-22 Identities = 353/537 (66%), Gaps = 8/537 (1%) Strand=Plus/Minus Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || ||||| |||| || ||||| |||||||| || | || || | ||||| || Sbjct 60604265 CTAATCTTTGACCTAGGCGGAGGTACGTTTGATGTGTCTATCCTGACCATCGAAGACGGG 60604206 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || ||||| || || | || || || || || |||||||| ||||| || || || || Sbjct 60604205 ATCTTTGAGGTGAAGTCCACGGCCGGAGACACCCATCTTGGAGGAGAGGACTTCGACAAC 60604146 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGAT 349951 || | || || || | || || ||||| || || | || || | ||| Sbjct 60604145 CGCATGGTCAACCACTTCATCTCTGAGTTCAAGCGCAAATACAAGAAGGACATCAGCGAT 60604086 Query 349952 AATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCA 350011 || || || ||||||| || | || || ||||||||||| ||||| || | || Sbjct 60604085 AACAAGAGGGCCGTGCGTCGTCTGCGCACCGCCTGTGAACGTGCCAAGCGCACCCTGTCC 60604026 Query 350012 TCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCA 350071 || | |||||| || ||||| ||||| ||||| ||| ||| || |||| | Sbjct 60604025 TCCAGTACCCAGGCCAGCATTGAGATTGACTCTCTGTATGAGGGCGTCGACTTCTACACC 60603966 Query 350072 TCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTTTAGAGCAACAATGG 350129 || || || | ||||| ||||| || || | | || || || |||| || ||| Sbjct 60603965 TCCATCACCAGGGCTCGCTTTGAGGA--GCTGAACGCTGACCTGTTCAGAGGCACCCTGG 60603908 Query 350130 ATCCTGTGGAAAAAGTAT-TAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTA 350188 | || |||| | |||| | | | || || || ||| ||| ||| || | || | Sbjct 60603907 ACCCCGTGG-AGAAGTCTCTGAGGGACGCCAAGATGGACAAGGCCCAGGTTCACGACATC 60603849 Query 350189 GTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTT 350248 || |||| || || || ||||| || || || | ||| |||| || || || || Sbjct 60603848 GTCCTAGTGGGAGGCTCCACACGCATCCCCAAGATCCAAAAGTTGCTGCAGGACTTCTTC 60603789 Query 350249 AATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGC 350304 ||||| || || | | | ||| | || || || ||||| || ||||| |||||||| Sbjct 60603788 AATGGGAAGGAGCTCAACAAGAGC-ATCAACCCTGATGAGGCGGTTGCCTATGGTGC 60603733 >seq22 Length=63420196 Score = 114 bits (126), Expect = 4e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 140562 TAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGA 140621 || || || || || || ||||||||||| | ||| |||| ||||| |||| |||||| Sbjct 34801123 TACTCTGACAACGTGCGACCATCTTCAAGCTATTTGCCAGTGAAGATCAGACCCTGCTGA 34801064 Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681 | |||| |||| ||||| |||||||| || || || || ||||| ||||| | ||| Sbjct 34801063 TTAGGATGAATACCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGCATCGCTG 34801004 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTG 140734 || ||||| ||||| || | | ||| | |||| ||| || ||||| ||||| Sbjct 34801003 GGCTCAACCTCAAGGGTGATGTTTTTTTCCGTTAATGTCTTCACAAAGATCTG 34800951 >seq16 Length=87796322 Score = 93.3 bits (102), Expect = 1e-13 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 |||| || || ||||| || || || || || ||||| ||||||||||| ||||| |||| Sbjct 43457320 CTTTCTGGATGTTATAGTCTGACAAGGTGCGACCATCCTCAAGTTGTTTGCCAGCGAAGA 43457379 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636 | ||||| ||||||||||||||||| ||| Sbjct 43457380 TCAGACGCTGCTGATCAGGAGGAATGCCT 43457408 >seq13 Length=107758822 Score = 91.5 bits (100), Expect = 4e-13 Identities = 102/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||| ||| |||| ||||| ||||| || || || ||||||| ||||| ||||||| Sbjct 62941470 ATGCAGTTGTTACCGTACCTGCCTACTTCAACGACTCCCAGCGCCAGGCAACCAAAGATG 62941529 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| | ||| ||||| | ||||| || | || || ||||| || |||||||| || | Sbjct 62941530 CTGGTACCATCTCGGGGCTGAATGTGCTGCGTATCATCAATGAGCCAACTGCTGCTGCCA 62941589 Query 349728 TTGCATATGGGCTTG 349742 |||| || |||||| Sbjct 62941590 TTGCCTA-CGGCTTG 62941603 >seq4 Length=82398023 Score = 89.7 bits (98), Expect = 2e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 349760 GaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACA 349819 |||| ||| | ||||| |||||| | ||||| || || ||||| || || | || || Sbjct 60873440 GAAAGGAATGTCCTTATCTTTGATCTGGGTGGCGGCACCTTTGACGTGTCCATCCTGACC 60873499 Query 349820 CTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAA 349879 |||| || || || ||||| || || | |||||||| || || ||||| ||||||||| Sbjct 60873500 ATTGAGGATGGCATCTTTGAGGTCAAGTCCACTGCTGGAGACACCCATCTGGGTGGAGAA 60873559 Query 349880 GATTTTGATAATCG 349893 || ||||| || || Sbjct 60873560 GACTTTGACAACCG 60873573 >seq5 Length=80503876 Score = 86.0 bits (94), Expect = 2e-11 Identities = 74/88 (84%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 235877 TCGTTCAATATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGT 235936 || || |||| |||||||| ||| |||| ||||||| ||||||||| ||||||||||||| Sbjct 15210325 TCATTTAATACAGGGGGAT-TAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGT 15210267 Query 235937 ACCGGGATCAAAACCCAGCAT-CTCCAT 235963 | ||||||| | ||| |||| |||||| Sbjct 15210266 AGCGGGATCGATGCCC-GCATCCTCCAT 15210240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510747297095465