Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 4e-15 seq6 93.3 5e-14 seq13 87.8 2e-12 seq15 84.2 2e-11 >seq4 Length=82398023 Score = 96.9 bits (106), Expect = 4e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 ||||||||||| |||| |||||||||||||||||||||||||||||||| || || ||| Sbjct 46249628 AGCTGTTTCCTGTTGGCCATGAAGGATGACAGCATTGAGGGCATCTACGACACCCTAAAG 46249687 Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350 |||| || | ||||| || | | ||||| ||||| Sbjct 46249688 CAGTGTGCCCTAATCTCTAAATCCGCAGGGGGCATCGG 46249725 >seq6 Length=87043187 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 || |||||| || || || |||||||| |||||||| || ||| ||||||||||| Sbjct 51008421 GCCTTTGCAGCTGTTGAGGGGATCTTCTTTTCTGGCTCCTTTGCTGCCATTTTCTGGCTA 51008480 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||| | || |||||||| ||||| | |||||||||||||| || | | |||||| Sbjct 51008481 AAGAAGAGGGGGCTCATGCCAGGCCTAACCTTCTCCAACGAGCTCATCAGCAGAGACGAG 51008540 Query 60111 G 60111 | Sbjct 51008541 G 51008541 >seq13 Length=107758822 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 ||||||||||| |||| |||||||| |||||||| |||||||||||||| || || ||| Sbjct 78357501 AGCTGTTTCCTGCTGGCCATGAAGGACGACAGCATCGAGGGCATCTACGACACCCTGAAG 78357442 Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350 |||| || | ||||| || | | ||||| ||||| Sbjct 78357441 CAGTGTGCCCTAATCTCAAAATCAGCAGGGGGCATCGG 78357404 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 79653 TCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCC 79712 |||||||||||| | | || ||||| | || |||| ||| || || ||||||||||| Sbjct 78357403 TCCGATGCCCCCTGCTGATTTTGAGATTAGGGCACACTGCTTCAGGGTGTCGTAGATGCC 78357462 Query 79713 CTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCT 79751 |||||| |||||||||||| || | |||||| ||||| Sbjct 78357463 CTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAACAGCT 78357501 >seq15 Length=103963436 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 || || || |||||||||||||| || || ||| ||||||||||| || ||| | || Sbjct 25930801 GTTGAGGGGATCTTCTTCTCTGGGTCCTTTGCTGCCATTTTCTGGCTGAAGAAGAGGGGG 25930860 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 |||||||| ||||||| ||||| || ||||| || | | ||||||| Sbjct 25930861 CTCATGCCTGGCCTGACCTTCTCAAATGAGCTCATCAGCAGAGACGAGG 25930909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546933015313200