Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq14 109 6e-19 seq27 100 3e-16 seq19 100 3e-16 seq15 86.0 7e-12 >seq14 Length=93901823 Score = 109 bits (120), Expect = 6e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | ||| ||||||||||||||||| | || ||||| || || Sbjct 68758746 GTGAAGATGTAACGGGGGCTGGCAGCATCCTTGCCACCGTTGATGCGGGTACCAAACTGA 68758805 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || ||||| || || ||||| ||||||| |||||||||||| || |||||||| ||| Sbjct 68758806 CCCAGCGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGGGCCAAGTTCACA 68758865 Query 117425 ATCGT 117429 ||||| Sbjct 68758866 ATCGT 68758870 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| |||| |||||| |||||||||||||| | || || |||||||| Sbjct 68758746 GTGAAGATGTAACGGGGGCTGGCAGCATCCTTGCCACCGTTGATGCGGGTACCAAACTGA 68758805 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || |||| |||| ||| | ||||||| |||||| || ||||| ||||| |||||| Sbjct 68758806 CCCAGCGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGGGCCAAGTTCACA 68758865 Query 152149 ATCGT 152153 ||||| Sbjct 68758866 ATCGT 68758870 >seq27 Length=43943985 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | ||| ||||| |||||||| || | || ||||| || || Sbjct 20258655 GTGAAGATGTAACGGGGGCTGGCAGCGTCCTTGCCCCCGTTGATGCGGGTACCAAACTGA 20258714 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || ||||| || || ||||| ||||||| |||||||||||| || |||||||| ||| Sbjct 20258715 CCCAGCGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGGGCCAAGTTCACA 20258774 Query 117425 ATCGT 117429 ||||| Sbjct 20258775 ATCGT 20258779 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| |||| |||||| || |||||||| || | || || |||||||| Sbjct 20258655 GTGAAGATGTAACGGGGGCTGGCAGCGTCCTTGCCCCCGTTGATGCGGGTACCAAACTGA 20258714 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || |||| |||| ||| | ||||||| |||||| || ||||| ||||| |||||| Sbjct 20258715 CCCAGCGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGGGCCAAGTTCACA 20258774 Query 152149 ATCGT 152153 ||||| Sbjct 20258775 ATCGT 20258779 >seq19 Length=82978132 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| |||| |||||| | ||||||||||| ||||||||| |||||||| Sbjct 52467874 GTGAAGATGTAACGGGGGCTGGCAGAGTCCTTGCCACCGTGCAGCCGCGTGCCAAACTGA 52467933 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141 || |||| || ||||| | ||||||| |||||| |||||||| ||||| Sbjct 52467934 CCCTGAGGCTGCAGCAGGTTCAAGTTGTTGCTGCCCACAAAATTCTGGGCCAA 52467986 >seq15 Length=103963436 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 || |||||||| || | ||||| || || | ||||||||||| || || | ||||||| Sbjct 25930907 TCGTCTCTGCTGATGAGCTCATTTGAGAAGGTCAGGCCAGGCATGAGCCCCCTCTTCTTC 25930848 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| || |||||| ||||| ||| ||||||||| || || ||| |||||| || Sbjct 25930847 AGCCAGAAAATGGCAGCAAAGGACCCAGAGAAGAAGATCCCCTCAACAGCCGCAAATGCA 25930788 Query 74892 AC 74893 || Sbjct 25930787 AC 25930786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545628013369000