Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq204568 120 4e-22 seq93808 120 4e-22 seq5 120 4e-22 seq15 87.8 2e-12 >seq204568 Length=5217 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 32661 ATAGCCAGAGCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATT 32720 ||||| ||| ||||||| ||||| ||||||||||| |||| || || || || | Sbjct 4117 ATAGCAGCAGCGTTGTGGTGGTATTTCATCTCTAAAGGAGTAGAGTACCTGGACACGGTC 4058 Query 32721 TTCTTCATAATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTT 32780 |||||||| |||| ||||| |||||||| || ||||| | ||||| |||||||| | | Sbjct 4057 TTCTTCATCCTGAGGAAGAAGTTTAACCAGGTCAGCTTCCTACACGTCTACCACCACTGT 3998 Query 32781 ACCATGTTTACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACAG 32831 |||||||| || | | ||||| || || || ||| | || || |||||| Sbjct 3997 ACCATGTTCACCCTCTGGTGGATCGGCATCAAGTGGGTGGCTGGCGGACAG 3947 >seq93808 Length=4840 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 32661 ATAGCCAGAGCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATT 32720 ||||| ||| ||||||| ||||| ||||||||||| |||| || || || || | Sbjct 1234 ATAGCAGCAGCGTTGTGGTGGTATTTCATCTCTAAAGGAGTAGAGTACCTGGACACGGTC 1293 Query 32721 TTCTTCATAATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTT 32780 |||||||| |||| ||||| |||||||| || ||||| | ||||| |||||||| | | Sbjct 1294 TTCTTCATCCTGAGGAAGAAGTTTAACCAGGTCAGCTTCCTACACGTCTACCACCACTGT 1353 Query 32781 ACCATGTTTACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACAG 32831 |||||||| || | | ||||| || || || ||| | || || |||||| Sbjct 1354 ACCATGTTCACCCTCTGGTGGATCGGCATCAAGTGGGTGGCTGGCGGACAG 1404 >seq5 Length=80503876 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 32661 ATAGCCAGAGCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATT 32720 ||||| ||| ||||||| ||||| ||||||||||| |||| || || || || | Sbjct 79606324 ATAGCAGCAGCGTTGTGGTGGTATTTCATCTCTAAAGGAGTAGAGTACCTGGACACGGTC 79606383 Query 32721 TTCTTCATAATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTT 32780 |||||||| |||| ||||| |||||||| || ||||| | ||||| |||||||| | | Sbjct 79606384 TTCTTCATCCTGAGGAAGAAGTTTAACCAGGTCAGCTTCCTACACGTCTACCACCACTGT 79606443 Query 32781 ACCATGTTTACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACAG 32831 |||||||| || | | ||||| || || || ||| | || || |||||| Sbjct 79606444 ACCATGTTCACCCTCTGGTGGATCGGCATCAAGTGGGTGGCTGGCGGACAG 79606494 >seq15 Length=103963436 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 32674 TGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATAATGA 32733 |||||| || | |||||||| || | || ||||| ||||| | |||||||| ||| Sbjct 38278965 TGTGGTGGTACTACATCTCTAAGGGAGTGGAGTATCTGGATACGGTGTTCTTCATCCTGA 38279024 Query 32734 GAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTTACTT 32793 | | ||| |||||||| || ||||| | || || ||||| || | |||||||| | Sbjct 38279025 GGAGGAAGTTTAACCAGGTCAGCTTCCTCCATGTCTACCATCACTGCACCATGTTCATCC 38279084 Query 32794 TAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACAG 32831 | | ||||| || || || ||| | ||||||||||| Sbjct 38279085 TCTGGTGGATCGGAATCAAGTGGGTCCCAGGAGGACAG 38279122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 601430407017200